PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03108.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 154aa    MW: 16759.7 Da    PI: 7.5605
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03108.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157e-052143123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C+ C++ F++   L  H+++H
  Zmw_sc03108.1.g00090.1.am.mk 21 YSCSFCKREFRSAQALGGHMNVH 43
                                  99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-61847No hitNo description
PfamPF139122.1E-62144IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.242148IPR007087Zinc finger, C2H2
SMARTSM003550.0062143IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802343IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEREQQPWSF MASFNWPPRS YSCSFCKREF RSAQALGGHM NVHRRDRARL RHTGSPSPPP  60
PPLPPANASS KAPAALAKPP PPVPNLNYPP PLLPYHRDGG KKRSWTDDVS TGLGVGLLQS  120
SCTTAASSTD PAVGPHPEDD DDDDLDLELR LGVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-141643229superman protein
2l1o_A4e-141643229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804370.17e-38transcriptional regulator SUPERMAN-like
TrEMBLA0A3L6QJZ57e-38A0A3L6QJZ5_PANMI; Transcriptional regulator SUPERMAN-like
STRINGPavir.Ab00024.1.p2e-34(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065