PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03125.1.g00190.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 228aa    MW: 24639.8 Da    PI: 9.1169
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03125.1.g00190.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.62.3e-20162196135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  Zmw_sc03125.1.g00190.1.am.mk 162 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 196
                                   ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.05E-14154198No hitNo description
PROSITE profilePS5011414.694156192IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-19156206IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-17160196IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.12E-12161193No hitNo description
PROSITE patternPS003440162187IPR000679Zinc finger, GATA-type
PfamPF003205.0E-18162196IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MRSNRSGGHF QGQTSPPRSR RVPFFTFPLP GPPACLYLLS ISLPHRHLGL ERRCAIALFH  60
QRAVHSCKKT KMLHEAAPCT CGLLYGSCGG GCSLLFSGDH HHYYMQCDSD GAYGGSVDCT  120
LSLGTPSTRR AEAGAARPHQ PNGGTHWEQS SGRQQESAAR RCANCDTTST PLWRNGPRGP  180
KSLCNACGIR YKKEERRAAA AAVAPSPTLA SVDSGMEYAA GQPQQWGW
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184096.14e-60GATA transcription factor 20-like
SwissprotQ9ZPX02e-26GAT20_ARATH; GATA transcription factor 20
TrEMBLA0A1E5VS131e-58A0A1E5VS13_9POAL; Uncharacterized protein
TrEMBLA0A3B6GXH29e-59A0A3B6GXH2_WHEAT; Uncharacterized protein
TrEMBLA0A453F6769e-59A0A453F676_AEGTS; Uncharacterized protein
STRINGMLOC_5372.15e-57(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]