PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03223.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 389aa    MW: 41936.6 Da    PI: 4.8894
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03223.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19124173255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  Zmw_sc03223.1.g00090.1.sm.mkhc 124 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 173
                                     69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.35E-22124182IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-32124182IPR001471AP2/ERF domain
PROSITE profilePS5103223.933124181IPR001471AP2/ERF domain
CDDcd000184.35E-32124182No hitNo description
SMARTSM003804.4E-37124187IPR001471AP2/ERF domain
PRINTSPR003672.6E-11125136IPR001471AP2/ERF domain
PfamPF008476.5E-12125173IPR001471AP2/ERF domain
PRINTSPR003672.6E-11147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MCGGAILSSF IRPSGAAAAA KKKKKQQSRR VTADVLWPGL GRNAGEDFEA DFREFERCLS  60
EDDDVDAGGD DEVPPPAPER FVFDGAAKPA PVSSRSTVDD VITPKSAQHD APAAKSAKRS  120
RKNQYRGIRQ RPWGKWAAEI RDPSKGVRVW LGTYNTAEEA ARAYDAEARK IRGKKAKVNF  180
PDEGLNGHKS ILKPSAANGT TLAPPSKTCA DEAFGDPRTG DNDLFAMFAF NDTKVPVKPA  240
ETAAFLPPLK PLVPTEKFGT NMLSDQSSNS YGSSSDFGWD DDTMTPDYTS VFAPTNAVPT  300
YAEPAYLQDG SSKKMRNNYG VAVPKGNGAP NLTQNMSGFD PEMKYVQMPY IESSSDVSMD  360
SLLQDDVAQD GASNGDLWSL DELLMAAGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-20124181563ATERF1
3gcc_A8e-20124181563ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11925AKKKKKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800946.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A0A9P8100.0A0A0A9P810_ARUDO; Uncharacterized protein
STRINGPavir.J01991.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142