PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03225.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 188aa MW: 21021.9 Da PI: 7.7088

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03225.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	82.8	3.2e-26	67	168	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a+ Zmw_sc03225.1.g00090.1.es.mkhc 67 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVNAK 143 99***************************8544444..48********************************* PP T--TT-EEEEEE-SSSEE..EEEEE-S CS B3 73 gLkegDfvvFkldgrsefelvvkvfrk 99 +L +gD+v+F ++++ +l+++++r+ Zmw_sc03225.1.g00090.1.es.mkhc 144 RLVAGDSVLFA--WNENNQLLLGIRRA 168 *******..7888889**997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.83E-49	51	187	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.8E-45	60	182	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.74E-25	66	167	No hit	No description
SMART	SM01019	1.2E-25	67	169	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.8E-25	67	168	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.479	67	169	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MEAQIPNYPS LPPQLICQLH NVTMHADAET DEVYAQMTLQ PLSPQELKDS FLPADLGTTS 60 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAK DLHGNEWKFR 120 HIFRGQPKRH LLTTGWSVFV NAKRLVAGDS VLFAWNENNQ LLLGIRRANR PQTVMPSSVL 180 SSDSMHIG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	9e-94	4	188	95	279	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021315059.1	1e-126	auxin response factor 6 isoform X2
Swissprot	A2X1A1	1e-125	ARFF_ORYSI; Auxin response factor 6
Swissprot	Q6H6V4	1e-125	ARFF_ORYSJ; Auxin response factor 6
TrEMBL	A0A453NF79	1e-128	A0A453NF79_AEGTS; Auxin response factor
STRING	evm.model.supercontig_17.53	1e-126	(Carica papaya)
STRING	MLOC_66152.2	1e-126	(Hordeum vulgare)
STRING	Sb04g004430.1	1e-125	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2012	36	85

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]