PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03252.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 76aa MW: 8351.68 Da PI: 11.4926

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03252.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	63.5	4.4e-20	13	75	312	374
GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 Wr+ l +aGF pv+ s++a++qa++ll+kv+++g+rve++ gsl+l W++ +Lvsv+ Wr Zmw_sc03252.1.g00010.1.am.mk 13 TPPWRALLASAGFVPVQASSFAEAQADSLLKKVPVRGFRVEKRAGSLLLHWQRGELVSVTTWR 75 678***********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	9.235	1	55	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-17	13	75	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
VSKYRGAIAG DRTPPWRALL ASAGFVPVQA SSFAEAQADS LLKKVPVRGF RVEKRAGSLL 60 LHWQRGELVS VTTWRC

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002468689.2	3e-39	scarecrow-like protein 6
Refseq	XP_021304770.1	6e-42	scarecrow-like protein 6
Swissprot	Q7XJM8	3e-21	SCL27_ARATH; Scarecrow-like protein 27
TrEMBL	A0A0A9H9V7	9e-38	A0A0A9H9V7_ARUDO; Uncharacterized protein
TrEMBL	A0A0A9HIY9	3e-39	A0A0A9HIY9_ARUDO; Uncharacterized protein
STRING	GRMZM2G060265_P01	6e-36	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP54630	2	2

Publications ? help Back to Top
Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Takanashi H, et al. miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis. Plant Mol. Biol., 2018. 96(6): p. 627-640 [PMID:29574557]