PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03261.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 545aa MW: 59187.5 Da PI: 10.7205

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03261.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00081	198	220	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C + F ++ L H++ H Zmw_sc03261.1.g00130.1.am.mk 198 FACHYCRRQFYSSQALGGHQNAH 220 78*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.03E-5	196	225	No hit	No description
PROSITE profile	PS50157	11.136	198	225	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	200	220	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence Send to blast
MHTAEDFVSY GPSEKGKGLL LSTHGPGSSA ADTELVGAAN HVGEGLRVLT PTTACLPSRS 60 SSATGAPWLV AMVGRNCFAV ATDRKRRDCD SIHILILGAH HLPHRSRDVR AETVDQVGKE 120 GRREKRLIGG GNGHRGQLDA AKVELGLLGG MVGSVVDFRP AAVRDVADQS SSLPVLLDLV 180 PPDQPPSTAA GLDPPQLFAC HYCRRQFYSS QALGGHQNAH KRERTLARRR GEVAPRPLGG 240 LLVHGSPTPF AVHGASLVTA PALGWVRAVM NSRAPAGGYA DRRVDGGGEE LPKLSLTLKL 300 RPFLGIRSVD RTNKQTNSAD RRAPPLSAPT QAAASLTGLD AKRVKKDSLG ISAEASLRVN 360 ERDETAGGLA APCMMDGWVE AFGTGRTDGQ MRARERKKVR PREQVHAVLR AESFPWPRRN 420 PLVNSDKALA VPSRSGWTTK RFRRQIKDAK DSNAFVTLLT FCSVPGPSFN CTLYYYSSHH 480 SPDAEADEDS ARFFFFNALY VRRSCSVLRV TVVRERACVW LVLPVGLRRR LVVVRRREIL 540 HGHAL

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence Send to blast

MHTAEDFVSY GPSEKGKGLL LSTHGPGSSA ADTELVGAAN HVGEGLRVLT PTTACLPSRS  60
SSATGAPWLV AMVGRNCFAV ATDRKRRDCD SIHILILGAH HLPHRSRDVR AETVDQVGKE  120
GRREKRLIGG GNGHRGQLDA AKVELGLLGG MVGSVVDFRP AAVRDVADQS SSLPVLLDLV  180
PPDQPPSTAA GLDPPQLFAC HYCRRQFYSS QALGGHQNAH KRERTLARRR GEVAPRPLGG  240
LLVHGSPTPF AVHGASLVTA PALGWVRAVM NSRAPAGGYA DRRVDGGGEE LPKLSLTLKL  300
RPFLGIRSVD RTNKQTNSAD RRAPPLSAPT QAAASLTGLD AKRVKKDSLG ISAEASLRVN  360
ERDETAGGLA APCMMDGWVE AFGTGRTDGQ MRARERKKVR PREQVHAVLR AESFPWPRRN  420
PLVNSDKALA VPSRSGWTTK RFRRQIKDAK DSNAFVTLLT FCSVPGPSFN CTLYYYSSHH  480
SPDAEADEDS ARFFFFNALY VRRSCSVLRV TVVRERACVW LVLPVGLRRR LVVVRRREIL  540
HGHAL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	87	DRKRRD

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274