PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03280.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 1001aa MW: 106528 Da PI: 10.2991

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03280.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.3	1e-16	812	858	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ + +Ka+iL +A+eY+ksLq Zmw_sc03280.1.g00130.1.am.mk 812 VHNLSERRRRDRINEKMRALQELVPHC-----NRTDKASILDEAIEYLKSLQ 858 6***********************8.....69***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF51430	2.13E-19	313	456	IPR023210	NADP-dependent oxidoreductase domain
Gene3D	G3DSA:3.20.20.100	1.4E-5	321	381	IPR023210	NADP-dependent oxidoreductase domain
Pfam	PF00248	8.7E-7	384	451	IPR023210	NADP-dependent oxidoreductase domain
Gene3D	G3DSA:3.20.20.100	1.1E-13	384	458	IPR023210	NADP-dependent oxidoreductase domain
CDD	cd00083	3.87E-17	803	862	No hit	No description
SuperFamily	SSF47459	2.49E-20	806	872	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.47	808	857	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.5E-14	812	858	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-20	812	867	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.1E-18	814	863	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1001 aa Download sequence Send to blast
MASTSSALFA TALVMALMLG GSGTCRAARR LADTGPETAP AAVPGIPAAP KPPVPPTVPE 60 APLPPAPTVP TVPEAGAVAS IPHAVPRVTA AATLPPIPPV SKVPAVTVPP MPVVPPAALP 120 PIPSVPKVPA VTVPPMPAVP PMTLPPIPSM PKVPALTVPP MPAVPPVTLP PIPPMPKVPA 180 DNVMPMLAVL AETLPPLTPT RSGVALQQTP ATDAATLPAR LPAKRNSRLI PATRRHPAAP 240 KPAKRVDGEK AAHRLTSSSQ LPPAMTMALQ VAGGAGCVLP LLSRRRAFRP ARAAPSGAAA 300 TTTTAKEEEG KVALGGSGVA VTKLGIGAWS WGDTTYWNEF QWDALPWRLG RGSVISALKA 360 SLDRLGVSSV ELYQLHWCFY AMQLQPLINR IKEIGASYGR TPTQLQVVLN WLVRQGNVVP 420 IPGAKNAEQA REFAGALGWS LAEQEVEELR GMASEVKPVI GFPVEKLSTS RLPARQTTEK 480 IAFSMRSQEI NPCLRSGLDM LAWCLGSTQS VWQSCRASVP VGTAPEPRPG APRLLMASSQ 540 TRRRSCVDPT GKRTVREQRT FRLQSAQLRV QSPLIWTSIA QKLERYSILA TGFADSEGLT 600 ATHPRPKISD SDVNSSSHPP FKCWITITVL SLLAAGDQTK AADGFWRPLN RSENPVCSLH 660 HWTLVFAAAS GRELYGTRRG AAGCKKWILA MDGGTGSTPP SQKRPLPSCD LPSWGSPDGE 720 LVELLWQDGA VVRSSFCGSN LVAATPTLRV GHDDAALALP PGASTSGSSA LLKRSRDEVD 780 SPGGEDAKFE AVDETRTSRR PASKRRTRAA EVHNLSERRR RDRINEKMRA LQELVPHCNR 840 TDKASILDEA IEYLKSLQLQ VQIMWMTAGM APMMLPGGHQ QLTGMCLNSS CMPPATQVLT 900 QMQRVPPFMN IPLRNQMPRV SSAATNVPNV ANQDQKNNIA GPRNRFLHPN DAPAATPEVP 960 SLFGYGSQMA HQNEIQELLA TIAAPALEAE PPSSSDGTGT T

Sequence ? help Back to Top

Protein Sequence Length: 1001 aa Download sequence Send to blast

MASTSSALFA TALVMALMLG GSGTCRAARR LADTGPETAP AAVPGIPAAP KPPVPPTVPE  60
APLPPAPTVP TVPEAGAVAS IPHAVPRVTA AATLPPIPPV SKVPAVTVPP MPVVPPAALP  120
PIPSVPKVPA VTVPPMPAVP PMTLPPIPSM PKVPALTVPP MPAVPPVTLP PIPPMPKVPA  180
DNVMPMLAVL AETLPPLTPT RSGVALQQTP ATDAATLPAR LPAKRNSRLI PATRRHPAAP  240
KPAKRVDGEK AAHRLTSSSQ LPPAMTMALQ VAGGAGCVLP LLSRRRAFRP ARAAPSGAAA  300
TTTTAKEEEG KVALGGSGVA VTKLGIGAWS WGDTTYWNEF QWDALPWRLG RGSVISALKA  360
SLDRLGVSSV ELYQLHWCFY AMQLQPLINR IKEIGASYGR TPTQLQVVLN WLVRQGNVVP  420
IPGAKNAEQA REFAGALGWS LAEQEVEELR GMASEVKPVI GFPVEKLSTS RLPARQTTEK  480
IAFSMRSQEI NPCLRSGLDM LAWCLGSTQS VWQSCRASVP VGTAPEPRPG APRLLMASSQ  540
TRRRSCVDPT GKRTVREQRT FRLQSAQLRV QSPLIWTSIA QKLERYSILA TGFADSEGLT  600
ATHPRPKISD SDVNSSSHPP FKCWITITVL SLLAAGDQTK AADGFWRPLN RSENPVCSLH  660
HWTLVFAAAS GRELYGTRRG AAGCKKWILA MDGGTGSTPP SQKRPLPSCD LPSWGSPDGE  720
LVELLWQDGA VVRSSFCGSN LVAATPTLRV GHDDAALALP PGASTSGSSA LLKRSRDEVD  780
SPGGEDAKFE AVDETRTSRR PASKRRTRAA EVHNLSERRR RDRINEKMRA LQELVPHCNR  840
TDKASILDEA IEYLKSLQLQ VQIMWMTAGM APMMLPGGHQ QLTGMCLNSS CMPPATQVLT  900
QMQRVPPFMN IPLRNQMPRV SSAATNVPNV ANQDQKNNIA GPRNRFLHPN DAPAATPEVP  960
SLFGYGSQMA HQNEIQELLA TIAAPALEAE PPSSSDGTGT T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	803	820	KRRTRAAEVHNLSERRRR
2	816	821	ERRRRD

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3174	34	82