PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03281.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 256aa    MW: 27678.9 Da    PI: 6.8708
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03281.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.4e-21122172256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                                    y+GVr+++ +g+W+AeIrdp+    r +r +lg+f+taeeAa+a+++a+++++g+
  Zmw_sc03281.1.g00040.1.sm.mk 122 VYRGVRQRP-WGKWAAEIRDPR----RaARKWLGTFDTAEEAARAYDRAALEFRGA 172
                                   69*******.**********82....48*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.304122179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-32122180IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-23122180IPR016177DNA-binding domain
SMARTSM003801.6E-35122185IPR001471AP2/ERF domain
PfamPF008471.0E-14122171IPR001471AP2/ERF domain
CDDcd000181.40E-32123181No hitNo description
PRINTSPR003671.2E-11123134IPR001471AP2/ERF domain
PRINTSPR003671.2E-11145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MTKKLVHAMA TSKRGPGAQI DNQRKQVSDY ADGRTMISHE QEHGIIVAAL RHVLSGYSTP  60
PPEVVTVASG EACGVCGIDG CLGCDFFTDD KAGPPELTQG VSYGTVTGGA EKRRRRRTRN  120
NVYRGVRQRP WGKWAAEIRD PRRAARKWLG TFDTAEEAAR AYDRAALEFR GARAKLNFPH  180
QEGPFLGHHG GDLIAATTET LTPPSPCSGD AEESAPGVWQ LGGPDGPGDE LWDGLRDVMK  240
MDDAEFWSLA SFSGAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21123179663ATERF1
3gcc_A1e-21123179663ATERF1
5wx9_A2e-211231811574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111116KRRRRR
2112117RRRRRT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460334.11e-87ethylene-responsive transcription factor ERF109
TrEMBLA0A1E5WBD21e-90A0A1E5WBD2_9POAL; Uncharacterized protein
STRINGOPUNC09G11150.13e-87(Oryza punctata)
STRINGSb02g026630.14e-87(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124