PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03327.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 254aa MW: 26739.2 Da PI: 6.7112

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03327.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.3	4.3e-06	38	105	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC.....................TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkas..................kapskKlsKaeiLekAveYIksL 54 +e+Er RR++++s +L +l+Pk + ++ L +A YIk+L Zmw_sc03327.1.g00060.1.am.mk 38 RKEIERMRRQHMKSLCTKLVSLIPKEHysskvigailhlslllpeIGILDTMTQLGSLDEAAAYIKKL 105 579**********************5447777777777777766544444456666667777777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-8	24	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	8.981	33	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-9	38	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.69E-4	38	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MEKAKKSSSS DTAAAGGKKS STSNNNSGSS GTTAAVERKE IERMRRQHMK SLCTKLVSLI 60 PKEHYSSKVI GAILHLSLLL PEIGILDTMT QLGSLDEAAA YIKKLKERVD DLQQKRSSAQ 120 LLASLRGGGV GASTSAAAAT VSSDAGSSEE AAVVAEDEAV APVVELRHRE DDSSLDVVLI 180 SSVDRPFKMH EVVTVLEEEG AEIINANFSV AGGKIFYTIH SRVQACSCVA SQCACSDCRV 240 VVGGHVVPSS SQIH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818432.1	1e-70	transcription factor bHLH162-like
TrEMBL	A0A1E5VNC8	7e-73	A0A1E5VNC8_9POAL; Uncharacterized protein
STRING	Pavir.Ea00786.1.p	2e-73	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133