PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03349.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 160aa    MW: 17703 Da    PI: 9.7179
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03349.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.51e-192660135
                          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                  C+ C+t kTplWR gp+g+k+LCnaCG++yrk+++
  Zmw_sc03349.1.g00040.1.sm.mk 26 CADCHTRKTPLWRGGPEGPKSLCNACGIRYRKRRQ 60
                                  ********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.24E-141971No hitNo description
SMARTSM004016.5E-182080IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.2E-172077IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011413.7842074IPR000679Zinc finger, GATA-type
CDDcd002025.69E-152565No hitNo description
PfamPF003201.4E-172660IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402651IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MELETDPISP SPDDDTTASG GEAKACADCH TRKTPLWRGG PEGPKSLCNA CGIRYRKRRQ  60
TRGLDANAEA QDQQQQKKKA AAASSGKDDK KTEDKEEYEG EKKKEKQAVT VELRVVGFGK  120
EVAGFSKLRQ RRRMRRKKCL SEEERAAVLL MALSGAIYAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126137KLRQRRRMRRKK
2129135QRRRMRR
3130137RRRMRRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818098.12e-50GATA transcription factor 15-like
TrEMBLA0A0A9NUC32e-66A0A0A9NUC3_ARUDO; Uncharacterized protein
STRINGPavir.Eb04066.1.p2e-48(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892