PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03357.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 301aa MW: 33321.9 Da PI: 9.2001

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03357.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.8	2e-34	58	149	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 Fl+k+y++++d++++++isws g sfv++d++ f++++Lp++Fkh++f+SF+RQLn+YgF+kv+ ++ we Zmw_sc03357.1.g00080.1.sm.mkhc 58 FLTKVYDMVSDPATDSIISWSPGGGSFVIWDSHAFERDLLPRHFKHNHFTSFIRQLNTYGFHKVDPDR---------WE 127 9**************************************************************999......... PP EEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 81 FkhksFkkgkkellekikrkks 102 ++++ F k++k+ll++ikrkk+ Zmw_sc03357.1.g00080.1.sm.mkhc 128 WANEGFVKDQKHLLKTIKRKKK 149 ********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.6E-56	54	147	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.92E-35	54	147	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.9E-37	55	147	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.4E-31	58	147	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.0E-19	58	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.0E-19	96	108	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.0E-19	109	121	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MGSKKKSPQP SAAAEGTPAA AGEAPGDVGA LPAGKGPAPA PAPAPAVVVP KPPDVAPFLT 60 KVYDMVSDPA TDSIISWSPG GGSFVIWDSH AFERDLLPRH FKHNHFTSFI RQLNTYGFHK 120 VDPDRWEWAN EGFVKDQKHL LKTIKRKKKI SQETPDPPQA PVKPAPGTET IEIGNYGGLE 180 KEVEKLKRDK TLLMQQLVDL RHYQQSSNLE LQNLIQRLHV MEQNQQQMMA LLAIVVQNPD 240 FLNQLVQQQR RSNLWNDDGS KKRRFIALEQ GPAAEQETSG ASAPIIQYRP PVPAIANEYL 300 V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-25	52	147	23	129	Heat shock factor protein 1
5d5v_B	2e-25	52	147	23	129	Heat shock factor protein 1
5d5v_D	2e-25	52	147	23	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002468244.1	1e-163	heat stress transcription factor A-9
Refseq	XP_004985150.1	1e-163	heat stress transcription factor A-9
Refseq	XP_021306702.1	1e-163	heat stress transcription factor A-9
Swissprot	Q10PR4	1e-139	HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBL	A0A1E5WFT3	1e-168	A0A1E5WFT3_9POAL; Heat stress transcription factor A-9
STRING	Si035840m	1e-163	(Setaria italica)
STRING	Sb01g042370.1	1e-162	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11494	30	39

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]