PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03366.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 410aa MW: 45029.8 Da PI: 9.4887

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03366.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	99.7	4.3e-31	189	330	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyat 70 lp+G++F+Ptd+ l+ e+L+ k++ ++ + + +i+ +i++++P++Lp v+++ +fF++ +k+y+t Zmw_sc03366.1.g00020.1.am.mk 189 LPAGVKFDPTDQVLL-EHLEGKARPESrklhplV---DefipTIEGEdGICYTHPKRLP-GVSKDGLVRHFFHRPSKAYTT 264 799*******999.99999985665442...133334666646******.555666688******** PP NAM 71 gkrknratk.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 g+rk+r+++ + +W++tgk+++vl+ +g++ g kk+Lv+y g+++k+ekt+Wvmh+y++ Zmw_sc03366.1.g00020.1.am.mk 265 GTRKRRKVHrddedggETRWHKTGKTRPVLA-NGSVRGYKKILVLYtnYGKQRKPEKTNWVMHQYHV 330 **7444555555778********.999*******6657999999*******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-35	182	349	IPR003441	NAC domain
PROSITE profile	PS51005	31.119	189	349	IPR003441	NAC domain
Pfam	PF02365	1.5E-13	190	330	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MQWMARRAAE AKNGARPKTA PPEPHDDANY PTLLLALGDK DSLRRSQSGG SSNRVDRQTR 60 SSAPLSHAGF QPCCRGRPQS RVRYSAHVAL SPNGFDHEPG EPVRGLYLFL RRDRMTWCNG 120 FTDVRAAAET PASVVAATAG KMAAASLAVL VEMCPSCGHR ARTAAHMHES PTLPPDDMLR 180 EMTTTIQDLP AGVKFDPTDQ VLLEHLEGKA RPESRKLHPL VDEFIPTIEG EDGICYTHPK 240 RLPGVSKDGL VRHFFHRPSK AYTTGTRKRR KVHRDDEDGG ETRWHKTGKT RPVLANGSVR 300 GYKKILVLYT NYGKQRKPEK TNWVMHQYHV GADEAERDGE LVVSKVFFQT QPRQCGSATA 360 AAKDPAGAAN NNPVISGGAL AGHTVLREAN VFGVLLQSSD DRDGLALDLD

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MQWMARRAAE AKNGARPKTA PPEPHDDANY PTLLLALGDK DSLRRSQSGG SSNRVDRQTR  60
SSAPLSHAGF QPCCRGRPQS RVRYSAHVAL SPNGFDHEPG EPVRGLYLFL RRDRMTWCNG  120
FTDVRAAAET PASVVAATAG KMAAASLAVL VEMCPSCGHR ARTAAHMHES PTLPPDDMLR  180
EMTTTIQDLP AGVKFDPTDQ VLLEHLEGKA RPESRKLHPL VDEFIPTIEG EDGICYTHPK  240
RLPGVSKDGL VRHFFHRPSK AYTTGTRKRR KVHRDDEDGG ETRWHKTGKT RPVLANGSVR  300
GYKKILVLYT NYGKQRKPEK TNWVMHQYHV GADEAERDGE LVVSKVFFQT QPRQCGSATA  360
AAKDPAGAAN NNPVISGGAL AGHTVLREAN VFGVLLQSSD DRDGLALDLD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001308424.1	1e-129	uncharacterized protein LOC100275733 isoform 1
Swissprot	O49459	1e-110	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A1E5VZX8	1e-135	A0A1E5VZX8_9POAL; NAC domain-containing protein 73
STRING	GRMZM2G031200_P01	1e-128	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3075	37	86

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]