PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03376.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 450aa    MW: 49837.4 Da    PI: 7.7733
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03376.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB183.12.3e-57254349297
                         NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 
                                   reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyv+p
  Zmw_sc03376.1.g00020.1.am.mk 254 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDP 334
                                   89******************************************************************************* PP

                         NF-YB  83 lkvylkkyrelegek 97 
                                   lk yl+k+re+ege+
  Zmw_sc03376.1.g00020.1.am.mk 335 LKHYLHKFREIEGER 349
                                   ************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-55251378IPR009072Histone-fold
SuperFamilySSF471138.07E-41256379IPR009072Histone-fold
PfamPF008082.4E-27259323IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.4E-19287305No hitNo description
PROSITE patternPS006850290306IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.4E-19306324No hitNo description
PRINTSPR006154.4E-19325343No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MDLFERKPLI RSLIEEELFR LSEEAEKEEL EEEEEAEAKA RAEQSTKDCG NGNEKDVRGG  60
ANPTWQTGQS CTSQVGRRPT CFRAHRNDQD ASYVVSIHAF PGPPQRPGCV LRGVHPRRCH  120
RQVAHTYQET NGLRRTTFTP GCILIRAIQR TRHSPPPSRF KLELRRPNSS RKFSPFLSFL  180
SSVDPACCSY TTRDWLQPFD EISIGFSVHR ALFLDLSNRG GREDRPERGG LGMPDSNNDS  240
GEPSNAGGEL SSPREQDRFL PIANVSRIMK KALPANAKIS KDAKETVQEC VSEFISFITG  300
EASDKCQREK RKTINGDDLL WAMTTLGFED YVDPLKHYLH KFREIEGERA AASSGAGSST  360
AATQQQHQHQ HQQNDMSRNA NAGAAYGGYG ADGMMMMMGQ PMYGGSTQQQ PPPQQQQQHH  420
MTMPGRGGYG HPGGGGGSSS SSGLGRQDRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A4e-44248344197NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331