PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03377.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 174aa MW: 19186 Da PI: 10.3045

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03377.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.1	1.7e-27	19	70	2	53
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 pr+rWt eLH +F++a+e LGG++kAtPk il++m+ kgLt++hvkSHLQk Zmw_sc03377.1.g00020.1.sm.mk 19 PRMRWTAELHGSFLRAIECLGGQDKATPKLILRFMGAKGLTISHVKSHLQKL 70 9*************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.2E-26	15	74	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-15	16	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-21	19	70	IPR006447	Myb domain, plants
Pfam	PF00249	4.9E-7	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MGSGGRNGAV RRYIRSTEPR MRWTAELHGS FLRAIECLGG QDKATPKLIL RFMGAKGLTI 60 SHVKSHLQKL KAWYNRKKRT KTGTEAAYKG MQGSQGISGM RTAGNQYCMH DYMQAMAMEE 120 RIKQEGLRWQ SDAAAAAAAP APAVSSLQTV GCLVQESGSF KLHHLSLTDE EDLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	20	71	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	20	71	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	20	71	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	20	71	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	20	71	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	20	71	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	20	71	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	20	71	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	20	71	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	20	71	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	20	71	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	20	71	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006652650.1	3e-63	PREDICTED: uncharacterized protein LOC102700890
TrEMBL	J3M0G9	6e-62	J3M0G9_ORYBR; Uncharacterized protein
STRING	OB04G28940.1	1e-62	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83