PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03377.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 391aa MW: 39707.9 Da PI: 8.3594

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03377.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.1	4.4e-39	58	118	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ s Zmw_sc03377.1.g00080.1.sm.mk 58 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRPS 118 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	56	116	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-33	60	116	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	62	116	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	64	100	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MEDMLMATNA AAANPSQGSA ANPPAPAPSS TPGSALRGGA PAAVAGAGSA ERRVRPQKEK 60 ALNCPRCNST NTKFCYYNNY SLQQPRYFCK TCRRYWTEGG SLRNVPVGGG SRKNKRPSSS 120 SASASTSASI TSSSMASSAG VASKNPKLTQ DGAQDLNLAF PHYGGLKAPV DFAAFPSLES 180 SSVGGATTSN GRGGSSGSAV GAISAMELLR STGYYMPLQV PMQMPGDYAA AGFSFGEFRA 240 PPPPPPPSQN VFGFSLDAHG SAAGAAAAGY GSGTGLPGAP ENASRLLFPF EDLKPPVSSG 300 GGDGAGGASV GPGDENSGHH QFEHGKEQGG GGPGAGHDTP GFWNSMSGGS GTSWLIEVLI 360 RTKVLELIRA SSEMSCLTVI PNQESSSHEK H

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MEDMLMATNA AAANPSQGSA ANPPAPAPSS TPGSALRGGA PAAVAGAGSA ERRVRPQKEK  60
ALNCPRCNST NTKFCYYNNY SLQQPRYFCK TCRRYWTEGG SLRNVPVGGG SRKNKRPSSS  120
SASASTSASI TSSSMASSAG VASKNPKLTQ DGAQDLNLAF PHYGGLKAPV DFAAFPSLES  180
SSVGGATTSN GRGGSSGSAV GAISAMELLR STGYYMPLQV PMQMPGDYAA AGFSFGEFRA  240
PPPPPPPSQN VFGFSLDAHG SAAGAAAAGY GSGTGLPGAP ENASRLLFPF EDLKPPVSSG  300
GGDGAGGASV GPGDENSGHH QFEHGKEQGG GGPGAGHDTP GFWNSMSGGS GTSWLIEVLI  360
RTKVLELIRA SSEMSCLTVI PNQESSSHEK H

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976522.1	1e-131	dof zinc finger protein 1 isoform X1
Swissprot	Q9SXG8	1e-117	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A0A9GUS7	1e-154	A0A0A9GUS7_ARUDO; Uncharacterized protein
STRING	Si010443m	1e-130	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]