PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03377.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 142aa MW: 15860.9 Da PI: 9.2698

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03377.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	105.2	5.5e-33	11	131	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT........ CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks........ 74 Fl+k+y ++ed++++++isw+++g++fvv+ ++efa+++Lpk+Fkhsnf+SFvRQLn+Y + +++ + Zmw_sc03377.1.g00160.1.am.mk 11 FLTKTYAMVEDPSTDDTISWNDRGKAFVVWRPDEFARDLLPKHFKHSNFSSFVRQLNTYVSSHPFSSSY---Tqpfvrldr 88 9********************************************************5333222222...124567779 PP .............X..TTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 75 .............k..ekiweFkhksFkkgkkellekikrkks 102 k + weF+h+ F++g+k+ll i+r+k Zmw_sc03377.1.g00160.1.am.mk 89 dhelglccvqgfkKvvADRWEFAHDCFRRGEKHLLGGIQRRKG 131 99998888877651669*********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	6.8E-46	7	129	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.73E-31	7	129	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.6E-36	7	129	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.5E-30	11	129	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.3E-15	11	34	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.3E-15	49	61	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.3E-15	62	74	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MASPAAGTPP FLTKTYAMVE DPSTDDTISW NDRGKAFVVW RPDEFARDLL PKHFKHSNFS 60 SFVRQLNTYV SSHPFSSSYT QPFVRLDRDH ELGLCCVQGF KKVVADRWEF AHDCFRRGEK 120 HLLGGIQRRK GTGAGAGAAA GP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	3e-22	1	129	11	120	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015691545.1	5e-63	PREDICTED: heat stress transcription factor B-2a-like
Swissprot	Q7XRX3	9e-61	HFB2A_ORYSJ; Heat stress transcription factor B-2a
TrEMBL	A0A1E5VLV9	4e-69	A0A1E5VLV9_9POAL; Heat stress transcription factor B-2a
STRING	OB04G29050.1	3e-61	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Publications ? help Back to Top
Nakayama A, et al. Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice. BMC Plant Biol., 2013. 13: p. 150 [PMID:24093634]