PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03384.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 134aa MW: 14614.4 Da PI: 8.6429

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03384.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.4e-05	24	46	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C++ F ++ L H++ H Zmw_sc03384.1.g00020.1.am.mk 24 FVCMYCDRKFYSSQALGGHQNAH 46 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.11E-8	17	69	No hit	No description
PROSITE profile	PS50157	10.803	24	51	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	26	46	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MEQELNLELT LLHRSASPEP LGFFVCMYCD RKFYSSQALG GHQNAHKYER SLAKRRREIA 60 AAMRAHGAAA PGSRDASARS GCAGVGVAAD TKARMDEQQD AATACALQLS NKKRSSENGY 120 GLQRAEELDL SLRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004956890.1	2e-50	uncharacterized protein LOC101776967
TrEMBL	A0A0A9HWN6	8e-62	A0A0A9HWN6_ARUDO; Uncharacterized protein
STRING	Pavir.J15401.1.p	2e-49	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274