PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03402.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 290aa    MW: 31542.6 Da    PI: 8.7746
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03402.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.8e-19102152155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   + ++GVr++  +g+WvAeIr+p   + r +r +lg+f ta eAa+a++aa+++l+g
  Zmw_sc03402.1.g00030.1.am.mk 102 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFATALEAARAYDAAARALYG 152
                                   679****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.824103160IPR001471AP2/ERF domain
SMARTSM003809.7E-31103166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-28104160IPR001471AP2/ERF domain
CDDcd000181.37E-16104162No hitNo description
PRINTSPR003671.7E-9104115IPR001471AP2/ERF domain
PfamPF008477.8E-13104152IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-20104160IPR016177DNA-binding domain
PRINTSPR003671.7E-9126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MPGAGISSAF LPPPRQLSIS PSSRPSVRPS VLPSVRPSSI NTSSCVPRQA KGYSKTRPQV  60
TTRVMDRSQQ QHQKSTGRKC CPLRRSRKGC MKGKGGPENQ QCPFRGVRQR TWGKWVAEIR  120
EPNRGARLWL GTFATALEAA RAYDAAARAL YGDCARLNLA TTASLVAAGR SMTTSCCSAD  180
DSAASSSVAS QLKDAVVLVP GERQCLMTQQ DAAAGGMDHT VVRSRTRTDQ LLQDDDDEDF  240
EQFVTRLPKA EDFGLEGFPP EVFDDDATGG ICWPDHTCWP AEMVQLVPRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-141001591171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651102.14e-67dehydration-responsive element-binding protein 2C
SwissprotQ84ZA15e-68DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLA2YY931e-65A2YY93_ORYSI; Uncharacterized protein
STRINGOS08T0565200-012e-66(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]