PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03404.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 305aa    MW: 34039.9 Da    PI: 6.6383
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03404.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY574e-18140207359
                                   -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS....STT....EEEEEEES--SS- CS
                          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae....dpk....vveitYegeHnhe 59 
                                   Dg +WrKYGqK++++ ++prsYYrCt++   gC+++k v++++e    dp+    + +++Y+g+H+++
  Zmw_sc03404.1.g00060.1.sm.mk 140 DGRQWRKYGQKKINKEKHPRSYYRCTYRqeqGCKATKTVQQQDEsagtDPTtaavMYTVVYHGQHTCK 207
                                   999************************98899*******99875222255423335678999***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-22135208IPR003657WRKY domain
SuperFamilySSF1182901.44E-19135208IPR003657WRKY domain
SMARTSM007742.8E-26138208IPR003657WRKY domain
PROSITE profilePS5081115.239140180IPR003657WRKY domain
PfamPF031061.1E-22140207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MKRHHHPNNS KMSQLPGQPP ACSRVCDHGS AMKEIAKEQS LVTQLRAIVL PALQADERSE  60
LVAQMFQDVL DCSSKAMAEL QLLHDKSDDD ALLVDDKKRV RRINPNEVGK EDVIKPHQKH  120
NSRRRFADSV PLETPVPHYD GRQWRKYGQK KINKEKHPRS YYRCTYRQEQ GCKATKTVQQ  180
QDESAGTDPT TAAVMYTVVY HGQHTCKQGT NGSDSGADGG FETQTTTVLQ SSSDDSRSSV  240
SKNCLEHPCS DQLQSSLDGR NEPINGSAEF IAENSMYEAF DMTAASALLE LDSCWDLDAL  300
LRSCA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-131402071069OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977389.11e-101probable WRKY transcription factor 63
TrEMBLK3Y9722e-99K3Y972_SETIT; Uncharacterized protein
STRINGPavir.Cb02194.1.p1e-100(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079