PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03407.1.g00140.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 350aa MW: 38596.7 Da PI: 6.8786

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03407.1.g00140.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.7e-12	165	208	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ErrRR r+N+ + Lr ++P+ +K+sK +L A+++Ik+Lq Zmw_sc03407.1.g00140.1.am.mk 165 DAERRRRGRLNNNILALRAVVPNI-----TKMSKEHTLSDAIDHIKNLQ 208 68*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.157	158	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.84E-17	160	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-9	163	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.6E-13	164	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-15	165	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MAVTKKAAVC FWLLSSEEVR VSDAADCIFI IHPFCKHDGD CDKPCENESD GFDGYIYTQG 60 MCRDWTCFCC APDHHKNKGK PGGPHKPLAP DHSVRKLASA ALNFLPSPSC VRGEAAMPRR 120 QRARSSEEVK AEDFVASVLN FAGGEDDDGQ PPPAATTVFK SKNLDAERRR RGRLNNNILA 180 LRAVVPNITK MSKEHTLSDA IDHIKNLQNQ VQELQQQLDE WPGEVLEKHG SALSSESFAA 240 AENTQYQGLV ELVPLAPQKY HLKVFCKKSG VFTKVLEALC SYNAQVTSLS TITFYGYAES 300 VFSIEVKGEQ DVVMMELRSL LAGIVEARNV ASRRGPHDRS DSATRLALIS

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MAVTKKAAVC FWLLSSEEVR VSDAADCIFI IHPFCKHDGD CDKPCENESD GFDGYIYTQG  60
MCRDWTCFCC APDHHKNKGK PGGPHKPLAP DHSVRKLASA ALNFLPSPSC VRGEAAMPRR  120
QRARSSEEVK AEDFVASVLN FAGGEDDDGQ PPPAATTVFK SKNLDAERRR RGRLNNNILA  180
LRAVVPNITK MSKEHTLSDA IDHIKNLQNQ VQELQQQLDE WPGEVLEKHG SALSSESFAA  240
AENTQYQGLV ELVPLAPQKY HLKVFCKKSG VFTKVLEALC SYNAQVTSLS TITFYGYAES  300
VFSIEVKGEQ DVVMMELRSL LAGIVEARNV ASRRGPHDRS DSATRLALIS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a crucial role in tapetum development. Required for male fertility and pollen differentiation within the developing anther. Plays a major role in maintaining tapetum development, starting in early meiosis. Required for pollen mother cell meiosis. May regulate the anther-specific cysteine protease CP1 and lipid-transfer proteins C4 and C6 (PubMed:16141453). Required for anther development. Functions in parallel with GAMYB to regulate early anther development. Functions upstream of the transcription factor TDR and may positively regulate its transcription (PubMed:20590996). {ECO:0000269\|PubMed:16141453, ECO:0000269\|PubMed:20590996}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680326.1	1e-108	LOW QUALITY PROTEIN: transcription factor UDT1-like
Swissprot	B9FXT3	3e-73	UDT1_ORYSJ; Transcription factor UDT1
TrEMBL	A0A368Q674	1e-108	A0A368Q674_SETIT; Uncharacterized protein
STRING	Pavir.Ba00709.1.p	1e-109	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11982	30	36

Publications ? help Back to Top
Liu Z,Bao W,Liang W,Yin J,Zhang D Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development. J Integr Plant Biol, 2010. 52(7): p. 670-8 [PMID:20590996]