PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03409.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 654aa    MW: 70203.8 Da    PI: 7.3904
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03409.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.17.2e-16601153087
                      trihelix  30 lWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                                   +++e ++k++e+g++rs+k+Ckek+en+ k+yk++ke++ +r  ++ +t+++f+qlea
  Zmw_sc03409.1.g00070.1.am.mk  60 QLDELGAKLAEQGYNRSAKKCKEKFENVVKYYKRTKESRAGR--NDGKTYRFFTQLEA 115
                                   678999**********************************97..56668*******85 PP
2trihelix109.81.7e-34399484187
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                                   rW+k ev+aLi++r+++++r++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy
  Zmw_sc03409.1.g00070.1.am.mk 399 RWPKAEVHALIQLRSNLDTRYQDAGPKGPLWEEISAGMRRLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPY 478
                                   8*********************************************************************8.99******* PP

                      trihelix  82 fdqlea 87 
                                   f+ql+a
  Zmw_sc03409.1.g00070.1.am.mk 479 FHQLDA 484
                                   ****85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-1063116No hitNo description
PROSITE profilePS500907.166392456IPR017877Myb-like domain
SMARTSM007170.0051396458IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-4397455IPR009057Homeodomain-like
PfamPF138378.3E-24398485No hitNo description
CDDcd122038.49E-30399463No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MQQQQQHGGG GRAGGGGGAA QQFGAQQVEM PPPPFSPAGQ RISVAEAPSP ISSRPPVLHQ  60
LDELGAKLAE QGYNRSAKKC KEKFENVVKY YKRTKESRAG RNDGKTYRFF TQLEALHATG  120
SPASAAPSPA TSFAPPSTTV GVSGPLPVRA PAEPPPSVSA GAGAGMLPTM GNVSFSTSNT  180
EDYSDDDDSD DEGTQELGGG ADERGKRKRL SEGAAAAGGS GGGKMMRFFE GLMKQVLERQ  240
EVMQQRFLEA IEKREQDRMI REEAWRRQEM ARLAREQEIL AQERAMAASR DAAVLSFIQK  300
ITGQTIPMPS IAAPAINVMP PPASHPPPQP HPMPAVSAPP SGSHTPPPQP KPSPQPQKSP  360
APATPTQQQP SDIVMMPADA PHADTPGHDG SGGGASSSRW PKAEVHALIQ LRSNLDTRYQ  420
DAGPKGPLWE EISAGMRRLG YNRNAKRCKE KWENINKYFK KVKESNKKRP EDSKTCPYFH  480
QLDALYRNKA LSSSGAGAAV HGHASSAPQE TVKTPPPPSQ PSQSSQHAAK TGKGKGGSTA  540
VAGAKKTEDM MKETMEHRQP EPQQVASRID GAGSDSMDED DDYDDDEDDD DVDGNKMQYE  600
IQFQHQHQQQ HQQPQHHQQH QNVVRPNAGG GNPPSTAAPS TTATTTGSFM GLVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1917GGRAGGGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794485.10.0trihelix transcription factor GTL1-like isoform X2
TrEMBLA0A2T8I1S40.0A0A2T8I1S4_9POAL; Uncharacterized protein
STRINGGRMZM2G414159_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175