PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03410.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ZF-HD

Protein Properties

Length: 231aa MW: 24618.2 Da PI: 7.1699

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03410.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	90.3	1.8e-28	25	73	5	57
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +YkeC++NhAa++Gg+a+DGCgEfmp+ ++ lkCaACgCHR+FHRr Zmw_sc03410.1.g00070.1.sm.mk 25 KYKECMRNHAAAIGGQAFDGCGEFMPA----DAPDPLKCAACGCHRSFHRRAA 73 7***********************9....4689**************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	8.2E-24	25	72	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.4E-24	25	72	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	7.0E-18	25	71	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.151	26	72	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	4.28E-18	89	157	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-29	89	158	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.0E-26	98	155	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MMKHLSLVPY EGGSSGGNSG GGGDKYKECM RNHAAAIGGQ AFDGCGEFMP ADAPDPLKCA 60 ACGCHRSFHR RAATSGPTPP RPEDFGGGVG SGSGSVGRKR FRTKFTPEQK ERMREFAEQQ 120 GWRINRNDDG ALDRFCHEIG VRRQVLKVWM HNHKNHHNHH GQKMMSNSHL DASVPTPAAA 180 VAPGATAHGM INPAGATGAI PRDDDDDDED DTDDSPPRAA VSSPSPSPIS V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	6e-24	99	155	18	74	ZF-HD homeobox family protein
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Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006653420.2	6e-70	PREDICTED: zinc-finger homeodomain protein 8-like
Swissprot	Q9SB61	2e-42	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A0D9W546	8e-55	A0A0D9W546_9ORYZ; Uncharacterized protein
STRING	LPERR04G09930.1	1e-55	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP815	35	145

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]