PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03418.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 701aa    MW: 77493.6 Da    PI: 9.054
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03418.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.22.7e-084795171755
                                   HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                   e+ +k +yps++++  LA+++gL+ +q+ +WF N+R ++
  Zmw_sc03418.1.g00010.1.am.mk 479 EMHYKWPYPSETQKGALAESTGLDLKQINNWFINQRKRH 517
                                   4555789*****************************885 PP
2ELK361.5e-12437458122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELKh+Ll+KYsgyL+sLkqE+s
  Zmw_sc03418.1.g00010.1.am.mk 437 ELKHHLLKKYSGYLSSLKQELS 458
                                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.4E-18242289IPR005540KNOX1
PfamPF037902.8E-20243287IPR005540KNOX1
SMARTSM012562.7E-24296356IPR005541KNOX2
PfamPF037912.5E-16302354IPR005541KNOX2
PfamPF037891.8E-9437458IPR005539ELK domain
SMARTSM011884.9E-7437458IPR005539ELK domain
PROSITE profilePS5121311.331437457IPR005539ELK domain
PROSITE profilePS5007112.584457520IPR001356Homeobox domain
SuperFamilySSF466896.84E-19458533IPR009057Homeodomain-like
SMARTSM003892.2E-12459524IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-27462522IPR009057Homeodomain-like
CDDcd000861.24E-11469521No hitNo description
PfamPF059204.9E-16477516IPR008422Homeobox KN domain
PROSITE patternPS000270495518IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
LLHWYKHGDG SNCARPRRPA RSPPHARAFP LPAHVLSSQG YCQRHYHRNN SLGRLELRGY  60
YHHRQGYILS RSLHCAPLPA PGFRREKAKL QAPPPPSPLL SPKPFSSFSP PENFTSTPNH  120
PLFSAGSRSS DNGRRARSLH QYIPGDRPTP MEEITHHFGV GGSGQGQQQH HHSWVSALGA  180
VLAPPPSAGL PLTLNTVAAG NSGAHSGSSN PVLQLANGGS LLDACVKAKQ PSSSSPYAGD  240
VEAIKAKIIS HPHYYSLLAA YLECQKASPV GAPPEVSARL TAIAQEVEAR QRTSLVGLGS  300
ATEPELDQFM VSHFYRLINE AYHEMLVKFR EELTRPLQEA MEFMRRVESQ LNSLSISGRS  360
LRRILSSARV WERAHGTVQG RGVSLPISCA RWCGLPDALV HYAYPAQRGT GSSEEDQEGS  420
GGETELPEVD AHGVDQELKH HLLKKYSGYL SSLKQELSKK KKKGKLPKEA RQQLLNWWEM  480
HYKWPYPSET QKGALAESTG LDLKQINNWF INQRKRHWKP SEEMHHLMMD GYHTPNAFYM  540
DGHFLNEPGL YRFDRTCDAI DAPDAPRCGE VRIARSMHGL PLWVGILEEA AVAKLVDWTG  600
RVPNAALCCD LRSCGLGSLA PGRAMELPAA VSRSPSRLQA RVVQDSCPES RHDAEADAGP  660
PPRRSPAFYS SVFAQIEEIG WERLVSSKGN DGISCLTFRV V
Functional Description ? help Back to Top
Source Description
UniProtBinds to RNA (PubMed:17965274). Possible transcription factor that regulates genes involved in development. Mutations in KN-1 alter leaf development. Foci of cells along the lateral vein do not differentiate properly but continue to divide, forming knots. May participate in the switch from indeterminate to determinate cell fates. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:17965274}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981913.10.0homeotic protein knotted-1
SwissprotP243450.0KN1_MAIZE; Homeotic protein knotted-1
TrEMBLA0A0A9CTZ30.0A0A0A9CTZ3_ARUDO; Kn1
STRINGGRMZM2G017087_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98863145
Publications ? help Back to Top
  1. Lowe B,Mathern J,Hake S
    Active Mutator elements suppress the knotted phenotype and increase recombination at the Kn1-O tandem duplication.
    Genetics, 1992. 132(3): p. 813-22
    [PMID:1334895]
  2. Sinha N,Hake S
    Mutant characters of knotted maize leaves are determined in the innermost tissue layers.
    Dev. Biol., 1990. 141(1): p. 203-10
    [PMID:2391001]
  3. Chen H,Jackson D,Kim JY
    Identification of evolutionarily conserved amino acid residues in homeodomain of KNOX proteins for intercellular trafficking.
    Plant Signal Behav, 2014. 9(3): p. e28355
    [PMID:24603432]
  4. Sinha NR,Williams RE,Hake S
    Overexpression of the maize homeo box gene, KNOTTED-1, causes a switch from determinate to indeterminate cell fates.
    Genes Dev., 1993. 7(5): p. 787-95
    [PMID:7684007]
  5. Greene B,Walko R,Hake S
    Mutator insertions in an intron of the maize knotted1 gene result in dominant suppressible mutations.
    Genetics, 1994. 138(4): p. 1275-85
    [PMID:7896105]
  6. Mathern J,Hake S
    Mu element-generated gene conversions in maize attenuate the dominant knotted phenotype.
    Genetics, 1997. 147(1): p. 305-14
    [PMID:9286690]