PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03444.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 787aa    MW: 83856.7 Da    PI: 8.0637
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03444.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.8e-06427448526
                                   --SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                   +C+ f ++  C++Gd C +aHg
  Zmw_sc03444.1.g00030.1.am.mk 427 PCPEFKKGAGCRRGDMCEYAHG 448
                                   8******88************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.1E-8258341IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.6E-9259346IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029711.851261332IPR020683Ankyrin repeat-containing domain
PfamPF000230.024263291IPR002110Ankyrin repeat
PROSITE profilePS500889.324297332IPR002110Ankyrin repeat
SMARTSM003569.8E-4422449IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4426450IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258427450IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.371458482IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MRYEIAATAI VPLLSPGLAT RASGMSLFGL ARLDATWLPL EPARAARALA RGHRVTRAEY  60
QAEGTGAARS RPATGFCCGL DDRDRGSANP HARCGAGVGR ATCSFLRVRD QPYMQQSRFT  120
LFFTVPILPP VGPVEERGEK KKENATAGAT RLPFAQEWTE LARKLRPNQN LVLSKRQKPQ  180
PKVPFPSLAS GPLALAAVSS NTFPDRAAPA MVVTSDAAAV SARLLELAAD DDAVALGSLL  240
AAHPSLADEP APWYSPARGA EPMTPLMVAA AYGSVSCIDV LLSPPYLADP NRASPSSLST  300
ALHLAAAGGA PSAPAAVSRL LAAGADSTLL DHLHRRPSDL VSLPHNSLPL KNHLLSLLGA  360
RKEWPPDPSL PDIKNGAYAS DDFRMYSFKV RACSRAYSHD WTECPFVHPG ENARRRDPRK  420
YHYSCVPCPE FKKGAGCRRG DMCEYAHGVF ESWLHPAQYR TRLCKDGVGC ARRVCFFAHT  480
AEELRPLYVS RDSSFTPPLS PSGAGNGVTG GWPQPSLPAL CLPGSAGSLH LSRLRTSLSA  540
RSMTMDEMLA TADYDGLGSP ASVRSARGTT LVPSNLDDLF SAEVASAAAS RSPRYADQGG  600
ATFSPTRKAA MLNQFQQQQS LLSPRATAAG VNPEPVSPMS SRLLAALTQR EKMQQQTFRS  660
MSSRDLGSGA SILVGSPVGS SWSKWGIPSG SGTQDWGADD EELGRLKRSS SFELQGGANG  720
DEPDLSWVST LVKEPTPEKA SNNGSAAMES INILGQAATH DGINDEEDTA GVIGSWLEQL  780
QLDEMVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14351RAARALARG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147048.20.0nucleic acid binding protein
SwissprotQ2QPW20.0C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67
TrEMBLC0HDR90.0C0HDR9_MAIZE; Zinc finger CCCH domain-containing protein 30
STRINGGRMZM2G027298_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126