PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03446.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 249aa    MW: 26837.2 Da    PI: 9.6397
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03446.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-1787136355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   + GVr+++ +gr++AeIrd + ng  +r++lg+f++ae Aa a+++a+++ +g
  Zmw_sc03446.1.g00020.1.am.mk  87 FIGVRRRP-WGRFAAEIRDSTRNG--ARVWLGTFDSAEAAAMAYDQAALSARG 136
                                   57******.**********44465..***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.83886144IPR001471AP2/ERF domain
SMARTSM003801.2E-3086150IPR001471AP2/ERF domain
PfamPF008471.4E-1287136IPR001471AP2/ERF domain
PRINTSPR003673.7E-88798IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-2787145IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-2187146IPR016177DNA-binding domain
CDDcd000182.54E-1687145No hitNo description
PRINTSPR003673.7E-8110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MLFCRIQPPY VSPALPPTEH PQGYFLYSQA DHTATAAMSS SSSSSSDYLS FNTIGSGDAV  60
PAPTSVPAAA AVARRERERA SPNKEAFIGV RRRPWGRFAA EIRDSTRNGA RVWLGTFDSA  120
EAAAMAYDQA ALSARGPTAA LNFPVERVRE SLHALALGGA AACGGSPVLE LKSRHSKRKR  180
RKKSEIIAAA AAAVNGTVLG RNKAKNKGAL AEQKRFVVEL EDLGAEYLEE LLRISEFDDQ  240
GLQELHRDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-23871461574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181KRKRRK
2176182KRKRRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571392.21e-52ethylene-responsive transcription factor 15
TrEMBLA0A2K2CX697e-51A0A2K2CX69_BRADI; Uncharacterized protein
STRINGPavir.Ba02374.1.p7e-55(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249