PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03463.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 680aa MW: 71970.8 Da PI: 7.1404

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03463.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.8	4.8e-35	322	413	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 Fl+k+y++++d++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+ Zmw_sc03463.1.g00010.1.am.mk 322 FLTKTYQLVDDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFA 393 9***************************************************************99......... PP ESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkks 102 ++ F++g+k+ll++i+r+k Zmw_sc03463.1.g00010.1.am.mk 394 NDCFRRGEKRLLCDIHRRKV 413 ***************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.5E-37	315	406	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.6E-59	318	411	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	8.71E-35	319	411	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.9E-31	322	411	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.4E-20	322	345	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.4E-20	360	372	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	361	385	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.4E-20	373	385	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence Send to blast
MDSLFDPFGR RNSNLDALLC STDSILDILA HGVRAAVSGH LPLGEALDST VDTMCGTLEL 60 RPSLRADLAW SLRPTPARVA LASGVAGVGS LRDTLAAGAG SALRVXXXXR CAARAAPWPV 120 TRLVPVACSP LWPMDRSASS TSASTLTLRT RDRLDGSTGH WQRAATLTHG ECLGFASPPP 180 PWIGIATTIY LQRKNLIAPR TRYPMIDTCP VHPGPCPRVP EPSRRKQPRE KVTEPSRSSS 240 AHHEANHTEP NRTLPPITAV HVPMELNPTP EDRAAGGYQC GRAHSARAGA AAAEASASEP 300 PPPAPVPSPA EAVGQRTLPT PFLTKTYQLV DDPAVDDVIS WNEDGSTFVV WRPAEFARDL 360 LPKYFKHNNF SSFVRQLNTY GFRKIVPDRW EFANDCFRRG EKRLLCDIHR RKVAPAAGLA 420 TAAAAAASGA VTVAAAPIPM ALPVTLPGSP GLSSDEQVLS SNSGSAEDHP HAPSGSGGGA 480 SGSASSDMGE ENERLRRENA RLTRELGQMK KLCNNIVLLM SKYAASQQLD ASAALSSVVN 540 NSGESSEALP QLPPLPPALL ELMPSCPAAL ATAAAGLAAE PDAAARLFGV SIGLKRTREE 600 DSGDGEEPAD HGRGSGEAKP EVSDAQQHPA AHPGSKETTP SSPDQHRWPI YRPTPVYHST 660 RVCNGQDPGP GSDQDGSSSR

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence Send to blast

MDSLFDPFGR RNSNLDALLC STDSILDILA HGVRAAVSGH LPLGEALDST VDTMCGTLEL  60
RPSLRADLAW SLRPTPARVA LASGVAGVGS LRDTLAAGAG SALRVXXXXR CAARAAPWPV  120
TRLVPVACSP LWPMDRSASS TSASTLTLRT RDRLDGSTGH WQRAATLTHG ECLGFASPPP  180
PWIGIATTIY LQRKNLIAPR TRYPMIDTCP VHPGPCPRVP EPSRRKQPRE KVTEPSRSSS  240
AHHEANHTEP NRTLPPITAV HVPMELNPTP EDRAAGGYQC GRAHSARAGA AAAEASASEP  300
PPPAPVPSPA EAVGQRTLPT PFLTKTYQLV DDPAVDDVIS WNEDGSTFVV WRPAEFARDL  360
LPKYFKHNNF SSFVRQLNTY GFRKIVPDRW EFANDCFRRG EKRLLCDIHR RKVAPAAGLA  420
TAAAAAASGA VTVAAAPIPM ALPVTLPGSP GLSSDEQVLS SNSGSAEDHP HAPSGSGGGA  480
SGSASSDMGE ENERLRRENA RLTRELGQMK KLCNNIVLLM SKYAASQQLD ASAALSSVVN  540
NSGESSEALP QLPPLPPALL ELMPSCPAAL ATAAAGLAAE PDAAARLFGV SIGLKRTREE  600
DSGDGEEPAD HGRGSGEAKP EVSDAQQHPA AHPGSKETTP SSPDQHRWPI YRPTPVYHST  660
RVCNGQDPGP GSDQDGSSSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hdg_A	1e-25	322	411	10	110	Heat shock factor protein 1
5hdn_A	1e-25	322	411	10	110	Heat shock factor protein 1
5hdn_B	1e-25	322	411	10	110	Heat shock factor protein 1
5hdn_C	1e-25	322	411	10	110	Heat shock factor protein 1
5hdn_D	1e-25	322	411	10	110	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957414.1	1e-176	heat stress transcription factor B-2c isoform X2
Swissprot	Q652B0	1e-143	HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBL	A0A1E5V3Q7	1e-177	A0A1E5V3Q7_9POAL; Heat stress transcription factor B-2c
STRING	Si030094m	1e-175	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Rerksiri W,Zhang X,Xiong H,Chen X Expression and promoter analysis of six heat stress-inducible genes in rice. ScientificWorldJournal, 2013. 2013: p. 397401 [PMID:24459431]