PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03480.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 178aa MW: 19866.7 Da PI: 10.7052

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03480.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.3	4.1e-11	30	72	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ++RR+riN+++ L++l+P+ +K++ +++Le+Av+Y+k Lq Zmw_sc03480.1.g00010.1.sm.mk 30 IAQKRRERINEKLRVLQQLIPNG-----TKVDISTMLEEAVRYVKFLQ 72 679****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.77E-13	22	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.865	22	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.14E-11	25	76	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-11	28	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.4E-10	28	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-8	30	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
TNAVAGDKRI FPIDERRNKS KNTNKKPRTI AQKRRERINE KLRVLQQLIP NGTKVDISTM 60 LEEAVRYVKF LQLQIKLGTS INSTATLAIS AYTPAPVVFD CHPYASLANS SFANTRSLSH 120 FVAQPHWEWV ASGYECVARG QPVVSLIISE TGQRGLLGKR RNKTAEASGT HQSKSLYD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025877736.1	4e-22	transcription factor ALC isoform X2
TrEMBL	A0A0P0YAL5	8e-22	A0A0P0YAL5_ORYSJ; Os12g0508500 protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4310	32	70