PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03491.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 897aa    MW: 97620.2 Da    PI: 9.9164
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03491.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.42.9e-33471527259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers+ d++++ei+Y+g+Hnh 
  Zmw_sc03491.1.g00100.1.am.mk 471 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSQ-DGQITEIVYKGTHNHA 527
                                   8****************************************.***************7 PP
2WRKY1054.1e-33624682159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK+vkg+++prsYY+Ct+++Cpv+k+ver+++d ++v++tYeg+Hnh+
  Zmw_sc03491.1.g00100.1.am.mk 624 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTPSCPVRKHVERASHDLRAVITTYEGKHNHD 682
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-29462529IPR003657WRKY domain
SuperFamilySSF1182903.01E-25465529IPR003657WRKY domain
PROSITE profilePS5081123.755465529IPR003657WRKY domain
SMARTSM007742.4E-36470528IPR003657WRKY domain
PfamPF031061.8E-25471526IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-36609684IPR003657WRKY domain
SuperFamilySSF1182905.49E-29616684IPR003657WRKY domain
PROSITE profilePS5081137.688619684IPR003657WRKY domain
SMARTSM007743.5E-38624683IPR003657WRKY domain
PfamPF031065.3E-25625682IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MPYSSRPLDN SRPVRWIRRV TPSKKDGEAA TNRPVTEVSP KDWNLEEHTV QHDRTESVAL  60
TKHRIETSAW GRISQRNDPR PPTLTVTENL TRLRTRMPRR HRAAPRGIAS PLLVVGIGFS  120
PSLRALASIE RRLFNATSFD RSMSSAPLGP NNPKELGFPP PPSSRLQSPP KSHHRASQPG  180
QPHHRLETAR RGSIGSCDEF NFPLFRPMTT SSSGSIEVPA NSRPGAFSFA STSFADMMGT  240
GPAAAGGASR YKTMTPPSLP LSPPLVSPSS FNILGGLNPA DFLDSPVLLT SSFDTTPPLP  300
CHFGARGRGA LTFSLWTYEV QDVEQSANAF CMFQIFPSPT VGAFASQQYS WMPAQGEEQG  360
SNNKEEQRQS YPDFSFQTPA PTSEEAVRTT TTFQTPIPSA SLGEETYTSQ QQQPWGFQQQ  420
SGMDAGATQA AFGSASTFQA TSSDATTMAL HVQGSGAGGC GQTQSQRRSS DDGYNWRKYG  480
QKQVKGSENP RSYYKCTFPN CPTKKKVERS QDGQITEIVY KGTHNHAKPQ NTRRNSSSAA  540
LLLQSGDASE HSFGGTPVGT PENSASFGDD DAAGNAGGDE LDEDEPDSKR WRKESEAEGL  600
SMAGNRTVRE PRVVVQTMSD IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TTPSCPVRKH  660
VERASHDLRA VITTYEGKHN HDVPAARGSA ALYRPAPPPP DNHYLAAAGV RPPAMAYQNS  720
GAGQQYAHGF SGQSSFGLQS ATGGSFAFSG FDDLTGSYMS QHQQQQRQND AMHASRAKEE  780
PREDMHGGPT WRDSRPRGAS GAPRWIGGRW RQPARHAGLN QTAGGFVSAV SPLQTTLIRS  840
AYRRPESGAG ACGPGFALSE NTVVFVMVRR QLGRRYPARR GRGDASKIPS RGCVLPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-35455685378Probable WRKY transcription factor 4
2lex_A1e-35455685378Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970421.30.0WRKY transcription factor WRKY24
SwissprotQ6B6R40.0WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A1E5WCJ00.0A0A1E5WCJ0_9POAL; Putative WRKY transcription factor 33
STRINGSi000906m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]