PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03504.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 518aa    MW: 57010.2 Da    PI: 10.5378
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03504.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.68.5e-10197253155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV+++k +g+++A+++d   +n   +k+ + g + ++e Aa+ ++ a++k++g
  Zmw_sc03504.1.g00100.1.am.mk 197 SIYRGVTRHKATGKFEAHLWDrHAWNPtSNKKGRQGAYASEEAAARSYDLAALKYWG 253
                                   57*******************98886676777777********************98 PP
2AP254.92.2e-17296348156
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   s y+GV +++ +grW+A+I +       +k+++lg+fg+ eeAa+a++ a+++++g+
  Zmw_sc03504.1.g00100.1.am.mk 296 SEYRGVARHHHNGRWEARIGHaG----GKKYIYLGTFGSQEEAARAYDLAALEFRGH 348
                                   569***99*************44....36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.86E-13197261No hitNo description
SuperFamilySSF541711.05E-12197262IPR016177DNA-binding domain
PfamPF008477.4E-7197253IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-11198262IPR001471AP2/ERF domain
PROSITE profilePS5103217.293198261IPR001471AP2/ERF domain
SMARTSM003802.9E-16198267IPR001471AP2/ERF domain
CDDcd000181.67E-22296357No hitNo description
SuperFamilySSF541717.85E-18296357IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-19297355IPR001471AP2/ERF domain
SMARTSM003802.5E-29297361IPR001471AP2/ERF domain
PfamPF008474.4E-13297348IPR001471AP2/ERF domain
PROSITE profilePS5103218.795297355IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MAGHTLARAK CCRAGTHETP CPRGTHSRNP MHARDALTKQ RAREERTKHC PLLAPLTAGP  60
DPSRFDRHGY SRLHCSLTYH LFLSPRRTRA AQRRAGRPTD RSQRKRHRGR VGRAEPRLRS  120
VFAFAMRKPA ACSLSSSSSW TPSAAFSSVS SAASTSSAGS SYAPPSCTHS KKKKRKSSRR  180
ARAENAGAVA VPRMSSSIYR GVTRHKATGK FEAHLWDRHA WNPTSNKKGR QGAYASEEAA  240
ARSYDLAALK YWGSRCVLNF PLESYKQERE KMKRMTREGS LATLRRRSSG FSRGVSEYRG  300
VARHHHNGRW EARIGHAGGK KYIYLGTFGS QEEAARAYDL AALEFRGHNA VTNFDISSYL  360
QPPGPRAQPK PALLLPKDEP ITDVAAPCSM DQRPQPTPQL QAKPEPADEG PALLDADDVD  420
HAIAEILPAL CMDPADFEAR YPARRAPAPG CCLQQQQHAD DLRGLALPDK SVMRFEDDIE  480
ALFDGAAPLL AGDDEASRAV SYAAATTISS LASGRRWL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199105DRSQRKR
2170175KKKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970326.21e-126AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLK3XQN51e-127K3XQN5_SETIT; Uncharacterized protein
STRINGSi004222m1e-128(Setaria italica)
STRINGSb03g037750.11e-128(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134012730