PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03507.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 427aa    MW: 47745.3 Da    PI: 6.133
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03507.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.4e-10231273754
                                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                     + Er RR+++N ++  Lr+l P++     +K + a+i+  A+eYI++L
  Zmw_sc03507.1.g00070.1.am.mkhc 231 ATERERREQLNVKYGALRSLFPNP-----TKSDRASIVGDAIEYINEL 273
                                     78**********************.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.008224273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.55E-11229285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-7230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-10231286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-7231273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-7233278No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MIISGDYFDG SHDSVIMSGS MIHDSSQSCI YNGTNTEEQN FRDLSNPADA HLTSEPSNHI  60
LSHQIGQGPQ TMAMEQQILN YDDASYPHGA YTAANDLLNV LQIHRCSSAP EFPSTQHSLG  120
DPVQNNVNHL ERNNDLSGAV IHESGMMFDD STLPLGYHAT QSHLLKDLYH SLPQNYGLLT  180
SDDERDGIIG VPGVSRNIFQ EIDGRQFDSP ALGKRRQKCG FGKAKGTGNY ATERERREQL  240
NVKYGALRSL FPNPTKSDRA SIVGDAIEYI NELNRTIKEL KILVEKKRNS TDRRKKVKLD  300
DEAADDGDSS SMQPMRDDQN DQMHGAIRSS WVQRRSKECE VDVRIVDDEI NIKFTEKKRA  360
NSLLCAAKVL EEFHLELINV VGGTIGDHHI FMFNTKIPKG SSVYACAVAK KLIEVVEMKH  420
QALNIFN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953537.20.0transcription factor EAT1
SwissprotQ7X8R01e-176EAT1_ORYSJ; Transcription factor EAT1
TrEMBLK3YY420.0K3YY42_SETIT; Uncharacterized protein
STRINGSi019192m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796