PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03509.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 422aa MW: 46628.7 Da PI: 4.5876

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03509.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.6	3.3e-09	15	57	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + +a +q G++ +++I ++++ + q++++++ + Zmw_sc03509.1.g00080.1.sm.mkhc 15 AWTRQEEENFFNALRQVGKN-FEKITHRVQ-SKNKDQVRHYYYRL 57 6***************99.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	13.167	11	62	IPR017884	SANT domain
SuperFamily	SSF46689	3.81E-10	12	61	IPR009057	Homeodomain-like
SMART	SM00717	5.1E-7	12	60	IPR001005	SANT/Myb domain
Pfam	PF00249	4.4E-7	15	57	IPR001005	SANT/Myb domain
CDD	cd00167	4.64E-7	15	58	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-5	15	60	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MPNAKSAPGT RQWAAWTRQE EENFFNALRQ VGKNFEKITH RVQSKNKDQV RHYYYRLVRR 60 MKKLLGPEFS LDAKDSKDTI AAMLRWSQQG SSGAVASAAY KKWERAAMAG VSLVADAAEE 120 LERSTIDPNV LCNVDAKTFT SSSNNLSTDG ISINPMKEAD SQAPAKLKLQ LFPINEATRK 180 ALEKDDQEMN SAALSEGEWA DTLTDISVGY LLTEASKVAN SDRIGMSVVK NALFLENPCS 240 YDSFDAAVAL HASCYQSGEQ SDHITHSTIW GGDETCDEFS FHLSVARKKE DSNIGVSCSP 300 SSDNEVLNSE GFQGFLKDLA GAEVADNPHT DNAKDTEELC AESTTRNSDH NELKDQSLAD 360 IYWPDSLGPL DLDIPSVRYQ AADLLLGDSQ NSWSRMMANS LDAFRNLSFF SMDKNDSIPP 420 IM

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MPNAKSAPGT RQWAAWTRQE EENFFNALRQ VGKNFEKITH RVQSKNKDQV RHYYYRLVRR  60
MKKLLGPEFS LDAKDSKDTI AAMLRWSQQG SSGAVASAAY KKWERAAMAG VSLVADAAEE  120
LERSTIDPNV LCNVDAKTFT SSSNNLSTDG ISINPMKEAD SQAPAKLKLQ LFPINEATRK  180
ALEKDDQEMN SAALSEGEWA DTLTDISVGY LLTEASKVAN SDRIGMSVVK NALFLENPCS  240
YDSFDAAVAL HASCYQSGEQ SDHITHSTIW GGDETCDEFS FHLSVARKKE DSNIGVSCSP  300
SSDNEVLNSE GFQGFLKDLA GAEVADNPHT DNAKDTEELC AESTTRNSDH NELKDQSLAD  360
IYWPDSLGPL DLDIPSVRYQ AADLLLGDSQ NSWSRMMANS LDAFRNLSFF SMDKNDSIPP  420
IM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985049.1	1e-118	TSL-kinase interacting protein 1
Swissprot	Q8LJT8	2e-37	TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBL	A0A1D6JVM3	1e-155	A0A1D6JVM3_MAIZE; TSL-kinase interacting protein 1
STRING	Si034363m	1e-117	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5478	36	43