PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03517.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 763aa    MW: 81443 Da    PI: 8.3362
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03517.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-06403424526
                                   --SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                   +C+ f ++  C++Gd C +aHg
  Zmw_sc03517.1.g00020.1.am.mk 403 PCPEFKKGAGCRRGDMCEYAHG 424
                                   8******88************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.18E-8234316IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.6E-9235322IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029711.851237308IPR020683Ankyrin repeat-containing domain
PfamPF000230.023239267IPR002110Ankyrin repeat
PROSITE profilePS500889.324273308IPR002110Ankyrin repeat
SMARTSM003569.8E-4398425IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4402426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258403426IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.371434458IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MRYEIAATAI VPLLSPGFGH ACIGHVLGPT RLDATCLPPR ASTRRARVGS RSPEGRVSSG  60
RYGCGPEPPG YWLLLRARRP RPGLGQPARA VRESGGRSAP SCVSGPSPTC NSPGSLYFLP  120
FRFYPRWVPL TQEWTELARK LRPNQNLVLS KRQKPQLKVP FPSLPSGPLA LSPISSNTFP  180
DRAAPAMAET SDAAAVSARL LELAADDDAV ALGSLLASHP SLADEPAPWY SPARGAEPMT  240
PLMVAAAYGS VSCIDVLLSP PYLADPNRAS PSSLSTALHL AAAGGAPSAP AAVSRLLAAG  300
ADSTLLDHLH RRPSDLLSLP HNSLPLKNHL LSLLGARKEW PPDPSLPDIK NGAYASDDFR  360
MYSFKVRACS RAYSHDWTEC PFVHPGENAR RRDPRKYHYS CVPCPEFKKG AGCRRGDMCE  420
YAHGVFESWL HPAQYRTRLC KDGVGCARRV CFFAHTAEEL RPLYVSRDSS FTPPLSPSGA  480
GNGVTGGWPQ PSLPALCLPG SAGSLHLSRL RTSLSARSMT MDEMLATADY DGLGSPASVR  540
SARGTTLVPS NLDDLFSAEV ASAAASRSPR YADQGGATFS PTRKAAMLNQ FQQQQSLLSP  600
RATAAGVNPE PVSPMSSRLL AALTQREKMQ QQTFRSMSSR DLGSGASILV GSPVGSSWSK  660
WGIPSGSGTQ DWGADDEELG RLKRSSSFEL QGGANGDEPD LSWVSTLVKE PTPEKASNNG  720
SVAMESINIL GQAATHDGIN DEEDTAGVIG SWLEQLQLDE MVV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147048.20.0nucleic acid binding protein
SwissprotQ2QPW20.0C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67
TrEMBLC0HDR90.0C0HDR9_MAIZE; Zinc finger CCCH domain-containing protein 30
STRINGGRMZM2G027298_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126