PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03527.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 236aa MW: 26654.1 Da PI: 5.7906

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03527.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.9	5.3e-28	61	110	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+ rqvtf+kRrng+lKKA+ELS+LCdaeva+++fs+ g+ly +ss Zmw_sc03527.1.g00040.1.am.mk 61 RIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSS 110 9***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.02	52	112	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.9E-36	52	111	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.09E-41	53	130	No hit	No description
SuperFamily	SSF55455	3.4E-30	53	134	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-29	54	74	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	54	108	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-25	61	108	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-29	74	89	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-29	89	110	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MAMTFFHFSS TNSGNGWDVS LVTKGEDACR RRPTDRFGEG DRRRGEQDRS GMGRGKVVLQ 60 RIENKISRQV TFAKRRNGLL KKAYELSILC DAEVALVLFS HAGRLYQFSS SSNLFKTLER 120 YQRYIYASAD VAVPSSDEMQ LTEVDAEAAP FPQLPWRSAP DAMVSDGPPQ PDHFFEALEG 180 NPSLQPAYVI PLSFYCRVDC PEPLLMANSE FQTMDINKEP VPEPGCCYYY PPAWRA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	6e-19	52	124	1	72	Myocyte-specific enhancer factor 2B
1tqe_Q	6e-19	52	124	1	72	Myocyte-specific enhancer factor 2B
1tqe_R	6e-19	52	124	1	72	Myocyte-specific enhancer factor 2B
1tqe_S	6e-19	52	124	1	72	Myocyte-specific enhancer factor 2B
6c9l_A	6e-19	52	124	1	72	Myocyte-specific enhancer factor 2B
6c9l_B	6e-19	52	124	1	72	Myocyte-specific enhancer factor 2B
6c9l_C	6e-19	52	124	1	72	Myocyte-specific enhancer factor 2B
6c9l_D	6e-19	52	124	1	72	Myocyte-specific enhancer factor 2B
6c9l_E	6e-19	52	124	1	72	Myocyte-specific enhancer factor 2B
6c9l_F	6e-19	52	124	1	72	Myocyte-specific enhancer factor 2B

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796987.1	4e-53	MADS-box transcription factor 34-like
Refseq	XP_025796988.1	4e-53	MADS-box transcription factor 34-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP74740	2	2