PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03546.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 598aa    MW: 65005.5 Da    PI: 11.1842
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03546.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-13203249455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                   +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++L+
  Zmw_sc03546.1.g00100.1.am.mk 203 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 249
                                   799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.047199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-16202252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-16202254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.56E-14202253No hitNo description
PfamPF000101.0E-10203249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-16205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MSSSETDAAL FTAVLGRDAA HHLATTPPHV DGPATAALAP ELQDRLHDLV ERGGAWTYGI  60
FWQESRAAAG LRTVVFLPCN GGVLELGSVV PVRETPEALR AIEAALAITP SAPEESMRIF  120
GKDLSRRGQL PAAAQANWAP PQLGGQSSPD DRKKDAVEQK PRDPPPKRVD FTKLEPNGQA  180
VVEERKPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPKIS KMDKASLLSD  240
AIAYIQELED RLRGGAKSPP AVEVKAMQDD VVLRVTTPLH AHPASRVFHA IRDARLSVVA  300
SELAVADDAV THTLMLRSPG PERLTAEAVL AAMSRATEGR DTPSPKKFSG RAGVVVPAPL  360
RLWPAAGRNW ARELPCSFLL RRKQKQPRVF IFSPASVAYA PFTLTTGRSC AFSAPSKSFL  420
LRGRHPCDVW EPRRPRVVVK WKSGSGPLKA RACHVPPPPQ AKAKPPAQWL TAARSRVARA  480
RRTAAAGPRL VTPGAGGRDD GATAPGWGWA GLACMGDQPR GDGRSVDVTE GPVRLLSASD  540
ADASKRPRLI PFRKCGHRKT TIGASNFKLP RRPAFSRVCA LLGKHVRDEW TRHGTRDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-24197252257Transcription factor MYC2
5gnj_B1e-24197252257Transcription factor MYC2
5gnj_E1e-24197252257Transcription factor MYC2
5gnj_F1e-24197252257Transcription factor MYC2
5gnj_G1e-24197252257Transcription factor MYC2
5gnj_I1e-24197252257Transcription factor MYC2
5gnj_M1e-24197252257Transcription factor MYC2
5gnj_N1e-24197252257Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184192RKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456225.11e-110transcription factor bHLH13
TrEMBLA0A446NKQ01e-136A0A446NKQ0_TRITD; Uncharacterized protein
STRINGSb03g032420.11e-109(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944