PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03547.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 467aa    MW: 52114 Da    PI: 9.3749
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03547.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.3e-31341397258
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                                   +Dgy+WrKYGqK++k+s++prsYYrCt ++C++kk+ver+ ++p+++ +tYeg H h
  Zmw_sc03547.1.g00100.1.am.mk 341 EDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERAMDEPDTLLVTYEGLHLH 397
                                   8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.383335400IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-28336398IPR003657WRKY domain
SuperFamilySSF1182901.27E-25338398IPR003657WRKY domain
SMARTSM007747.1E-35340399IPR003657WRKY domain
PfamPF031061.4E-24341397IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MATHPAGAGA GAGAGGISID QKWKIDGRVG FDQSMVAAEL IERRKEEELR KYSFVCTHCK  60
HWSTPCTPEN LKMTTTMMID EQVPSSCWIS ARDSLNPMVR STRLNSEYAP SVFFLPALRS  120
SRAVERKGNS TSGPGIRECK LIHGDTKTAQ ATRRIWSKTE SARIHALHYS IHSTNESGRE  180
RVDPAELQLQ APIHSSAGMP AIYPIARPAR LRMDGWMDSL NQHLRRTAPC CAIHAFRPRM  240
QQISVLDRDR PITHVDHDEE TEGPRRRRET SMVNKLISTV YSGPTISDIE SALSFTGGAG  300
DHQLAVKYGS SPVVFSPEKV LSKMENKYTL KIKTCGNGLA EDGYKWRKYG QKSIKNSPNP  360
RSYYRCTNPR CNAKKQVERA MDEPDTLLVT YEGLHLHYTY SHFLHSAQVQ HQQGLPKKPK  420
RGPANSSSLL LSSDHDEDNS PPSPSASSVP WTPTSPYIDM AILSNIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-193393971674Probable WRKY transcription factor 4
2lex_A5e-193393971674Probable WRKY transcription factor 4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551