PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03639.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 355aa    MW: 38259.9 Da    PI: 7.7243
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03639.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like993.2e-31238293156
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                   k r++W+peLH++Fv a++qLGG+++AtPk+i+elmkv+ Lt+++vkSHLQkYRl+
  Zmw_sc03639.1.g00030.1.am.mk 238 KSRRCWSPELHRQFVAALNQLGGPQVATPKQIRELMKVDELTNDEVKSHLQKYRLH 293
                                   68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.255235295IPR017930Myb domain
SuperFamilySSF466891.06E-16236296IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28236296IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-25238293IPR006447Myb domain, plants
PfamPF002493.4E-6240291IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGLDVGEIGM GADLSLDLRH FASKAMKQTR SALVSDMDAY IRRLEEERGK IEVFRRELPI  60
CARLLADVID VMKEEAEKEK KNDRDEEEEE EDGATGDKSK WMSTAQLWTS GSGRDAAEPE  120
KQESDKGRSS SEQNSSGSAF TLFNAVGSLA PASGLRPRLR KDDDKAVGAG MPDLSLLSPP  180
PITSVPAAAA VESRRQVVGL AHAAARAASV GGPALCLQPH AQRTTPPPQP QQQQQARKSR  240
RCWSPELHRQ FVAALNQLGG PQVATPKQIR ELMKVDELTN DEVKSHLQKY RLHTRRTPSG  300
PAVVSQPIVL VGGLWIPHQE HSHSGSHAQS SGSPQGPLRF SPASGVAVSS AATAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-13238291154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-13238291154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-13238291154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-13238291154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459272.21e-131transcription factor HHO2
TrEMBLA0A0A9H2111e-132A0A0A9H211_ARUDO; Uncharacterized protein
STRINGSb02g001600.11e-131(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107