PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03676.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 407aa MW: 45144.5 Da PI: 10.3494

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03676.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	69.6	6e-22	326	378	1	53
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETT CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhels 53 +CqvegC dl akeyhr+h+vCe+h+k+p v+v+g+e+rfCqqCsr+ ls Zmw_sc03676.1.g00010.1.am.mk 326 RCQVEGCGLDLGGAKEYHRKHRVCEAHTKCPRVVVAGQERRFCQQCSRWVCLS 378 6***********************************************98775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.6E-22	320	376	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	18.384	324	401	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.44E-20	325	378	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.5E-16	327	378	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
VLFLTPEVRS LSLSVPLGGE VAAPSSEERC AVLFVWAEFT SEATQGMKRA QSNTLDNWAW 60 QRCLVYLSKS FLVAAAPCLL RPVFCSSCAT HFSEKTFSCT PPRSNHFAAR KREGSLLDLS 120 RCGRRRKTRP VPSLSPGRRR TTVHPRPDRA RVGCCFLERP SDPVDDGRDR SLRRQLAGRS 180 RRILAWLGSL VERFVVAWRR RCCRWPRPWP PPPTYYLLDD AWLGKWNRLR TVNSRGIDLS 240 AGRSAHCSSL RSPNQPRIAQ AESAMEWTVP KPAASPSSPP LLWDWGDSAA PASGSSGEAP 300 ARRGGKEREG KRAKGGEDGG GGGEVRCQVE GCGLDLGGAK EYHRKHRVCE AHTKCPRVVV 360 AGQERRFCQQ CSRWVCLSCC FQFPGRRSSA VDLVDPCRAA NSRLSCA

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

VLFLTPEVRS LSLSVPLGGE VAAPSSEERC AVLFVWAEFT SEATQGMKRA QSNTLDNWAW  60
QRCLVYLSKS FLVAAAPCLL RPVFCSSCAT HFSEKTFSCT PPRSNHFAAR KREGSLLDLS  120
RCGRRRKTRP VPSLSPGRRR TTVHPRPDRA RVGCCFLERP SDPVDDGRDR SLRRQLAGRS  180
RRILAWLGSL VERFVVAWRR RCCRWPRPWP PPPTYYLLDD AWLGKWNRLR TVNSRGIDLS  240
AGRSAHCSSL RSPNQPRIAQ AESAMEWTVP KPAASPSSPP LLWDWGDSAA PASGSSGEAP  300
ARRGGKEREG KRAKGGEDGG GGGEVRCQVE GCGLDLGGAK EYHRKHRVCE AHTKCPRVVV  360
AGQERRFCQQ CSRWVCLSCC FQFPGRRSSA VDLVDPCRAA NSRLSCA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj0_A	8e-14	322	374	1	53	squamosa promoter-binding protein-like 12

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	126	RKREGSLLDLSRCGRRRK

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6271	29	52