PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03684.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 364aa    MW: 41368.3 Da    PI: 4.7488
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03684.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.91.8e-34421322101
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                                     Fl+k+++++ed++++ ++sws+ gnsfvv+d++ fa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv+ ++         we
  Zmw_sc03684.1.g00020.1.sm.mkhc  42 FLTKTFDLVEDPSTDAVVSWSRAGNSFVVWDPHVFADSLLPRLFKHSNFSSFVRQLNTYGFRKVDPDK---------WE 111
                                     9****************************************************************999.........** PP

                                     EEESXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  81 FkhksFkkgkkellekikrkk 101
                                     F+++ F +g+++ll++ikr+k
  Zmw_sc03684.1.g00020.1.sm.mkhc 112 FANEGFLRGQRHLLKTIKRRK 132
                                     *******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.9E-6038131IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.1E-3838131IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.31E-3438131IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-3142131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-194265IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-1993105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGSSAPGIVK EELLEHGDGG GGGGRDAPRP MEGLHEVGPP PFLTKTFDLV EDPSTDAVVS  60
WSRAGNSFVV WDPHVFADSL LPRLFKHSNF SSFVRQLNTY GFRKVDPDKW EFANEGFLRG  120
QRHLLKTIKR RKPLSTAPAS RQQAPAPASC LEVGEFGFEE EIDRLKRDKN ILISEVVKLR  180
QEQQTTREHV HAMEERLRTA EQKQVQMMGF LARAMRNPEF FQQLVQQQDK RKELEDAISK  240
KRRRPIDYAP FYNPGDSSQR EQLDSQFLFD SGVLDGLTEP GMPELENLAA NMQELGKGNA  300
DDVKMDQESG QPELNDDFWE ELLVEDYGDK AGHPELEART EVVDEIAQQL VDWWRCIDTV  360
KTTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-262313110129Heat shock factor protein 1
5d5v_B1e-262313110129Heat shock factor protein 1
5d5v_D1e-262313110129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130LKTIKRR
2229243KRKELEDAISKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679240.10.0heat stress transcription factor A-2c isoform X2
SwissprotQ338B00.0HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLK4ABP70.0K4ABP7_SETIT; Uncharacterized protein
STRINGSi036304m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]