PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03738.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 247aa MW: 27070.9 Da PI: 9.7831

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03738.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	56.5	9.7e-18	16	114	57	128
NAM 57 ewyfFskrdkkyatgkrknra..........................tksgyWkatgkdkevlskkgelvglkktLvfy.. 109 + ++F++ +k+y+tg+rk+r+ ++ +W++tgk+++v++ g++ g+kk+Lv+y Zmw_sc03738.1.g00040.1.sm.mk 16 SRHYFHRPSKAYTTGTRKRRKiqpptaatssssspaaqhqqqqqqqkRSETRWHKTGKTRPVVV-AGRQRGCKKILVLYtn 95 669***************889**************99988755789********.9999******55 PP NAM 110 kgrapkgektdWvmheyrl 128 g+++k++kt+Wvmh+y+l Zmw_sc03738.1.g00040.1.sm.mk 96 FGKHRKPQKTNWVMHQYHL 114 47999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	18.498	1	133	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-20	11	37	IPR003441	NAC domain
Pfam	PF02365	1.3E-7	56	114	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-20	64	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MGDIRGHAGL TKDGLSRHYF HRPSKAYTTG TRKRRKIQPP TAATSSSSSP AAQHQQQQQQ 60 QKRSETRWHK TGKTRPVVVA GRQRGCKKIL VLYTNFGKHR KPQKTNWVMH QYHLGEAEEE 120 REGELVVSKI FYQTQPRQCG AAEPSAASSA ATVEMSDQAA AVPVATSSSS AGVAFQGAVG 180 IDEFNFAQFR SSFEEEDGRP ASGLEEVIMG CTSRRATGTE TSGSGSKASA DWQYPSFWPP 240 DNQDHDG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020399939.1	2e-84	NAC domain-containing protein 75 isoform X1
Refseq	XP_020399940.1	1e-84	NAC domain-containing protein 75 isoform X2
Swissprot	Q9M0F8	1e-60	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A3L6DFR4	1e-85	A0A3L6DFR4_MAIZE; NAC domain-containing protein 73
STRING	GRMZM2G115721_P01	1e-104	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP31779	4	4

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]