PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03770.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 653aa    MW: 69100.3 Da    PI: 8.8098
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03770.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-05104126123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C+ C+k F r  nL+ H r H
  Zmw_sc03770.1.g00010.1.am.mk 104 FVCEVCSKGFQREQNLQLHRRGH 126
                                   89*******************88 PP
2zf-C2H211.50.00091181203123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +C+k++  +s+ k H + +
  Zmw_sc03770.1.g00010.1.am.mk 181 WKCDKCSKRYAVQSDWKAHSKIC 203
                                   58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.3E-5103126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.36E-7103126No hitNo description
SMARTSM003550.0086104126IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.032104126IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
SMARTSM00355150146176IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.4E-4169202IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.36E-7176201No hitNo description
SMARTSM00355140181201IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MASNSSAAAV AALFGIRDGD HHEQMKPLLA QQHQQSHVAP LNIGASSSAG SGQATAVPPL  60
PVKKKRNLPG NSSNGVSFLI YVHADPDAEV IALTPKTLMA TNRFVCEVCS KGFQREQNLQ  120
LHRRGHNLPW KLKQKDPAQA QRRRVYTCPE PTCAHHDPAR ALGDLTGIKK HFCRKHGEKK  180
WKCDKCSKRY AVQSDWKAHS KICGTREYRC DCGTLFSRYK ARSTDDGAAE RYNLHSYGEV  240
KRCPRPEASR PLPACIAFRS KERKDLHAPT TLAHWRDSFI THRAFCDALA QESARLPTAG  300
LTAGHLYGAT GAANMALSLS QVGSHLASTL GADVHGHHQD LLRLGGVSGA TRLDHLLGPS  360
GAVAFRTMPL PPGSAFLMGA PQEFGGDGDV TGSQVFLQGK PFHGLMNLPD LRGNGAGGQL  420
ASGLFNHGYI ASSANSSGTS SHGHPSHGHM TSDQFSEGGR GGGGGGGSES SAAVLFNAGG  480
NFSGGDHQVA PGRMYNEQAM VLPQMSATAL LQKASQMGSS TSAHGGASVF RGLVDSSVPS  540
DPQGRASMVD QSQIHLQSLM NSLAGGGMFG SANSGNMIDP RLYDMDDQDV KVSHQDRGGT  600
EMTRDFLGVG GSGVIRGMPV ARGEQHDGAD DLSSLEAEMK SASSSFTGGS RMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-21177218344Zinc finger protein JACKDAW
5b3h_F1e-21177218344Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1457465GGRGGGGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105281.20.0INDETERMINATE-related protein 10
TrEMBLA0A1E5V9G20.0A0A1E5V9G2_9POAL; Protein indeterminate-domain 6, chloroplastic
STRINGSb04g032140.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798