PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03771.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 481aa MW: 53439.1 Da PI: 9.2935

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03771.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.6	4.5e-08	354	398	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr+RR+++ ++++ L ++ + K +K +i++ A YI++L Zmw_sc03771.1.g00040.1.am.mk 354 HMMRERQRREKLSQSYADLHAMVAAR-----SKGDKNSIVQSAAIYIHEL 398 889********************7.....6999999*******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.725	349	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.41E-12	349	419	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-9	353	416	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.83E-8	353	403	No hit	No description
Pfam	PF00010	7.3E-6	354	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-5	355	404	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MKLDAPRRRV SLDHFSEECA SFCSEERWAY DPHLRSTARV ATTTAAAPRH RGANLSVAGD 60 SGLNAAWAWS HSLVFPRRHP FLPIGVPQGE HAEERGVSWD CPRPRRDYLW TGLERTAALS 120 PSIDHARASA TTNGLIGLAS NVRARTYVEY HAESRGRSNR MVAGNSSYGC LVFPSRADSS 180 SHNTRCKERR LVRPCPVQSA CECERALEIF QLDRLRGTFD LAPHLTCAPP DSIAGDNQTS 240 PLATPGPPRQ RRLLARSRRE MQMDVGAPYF YAGFHDEIPC FYPHGFAPAA SPELLPFGFD 300 STSPLLEQPG APELQTSGTA PQGSTWTNVK TREEEEGRRR QPAGAVESSR GFRHMMRERQ 360 RREKLSQSYA DLHAMVAARS KGDKNSIVQS AAIYIHELKG AREQLRRRNE ELKARILGHD 420 ARQPSVKVDF EVDDPASGTD CMIGALRRLR SMGVKARGIR SSMSGGKLWT EMNVETTVSD 480 P

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MKLDAPRRRV SLDHFSEECA SFCSEERWAY DPHLRSTARV ATTTAAAPRH RGANLSVAGD  60
SGLNAAWAWS HSLVFPRRHP FLPIGVPQGE HAEERGVSWD CPRPRRDYLW TGLERTAALS  120
PSIDHARASA TTNGLIGLAS NVRARTYVEY HAESRGRSNR MVAGNSSYGC LVFPSRADSS  180
SHNTRCKERR LVRPCPVQSA CECERALEIF QLDRLRGTFD LAPHLTCAPP DSIAGDNQTS  240
PLATPGPPRQ RRLLARSRRE MQMDVGAPYF YAGFHDEIPC FYPHGFAPAA SPELLPFGFD  300
STSPLLEQPG APELQTSGTA PQGSTWTNVK TREEEEGRRR QPAGAVESSR GFRHMMRERQ  360
RREKLSQSYA DLHAMVAARS KGDKNSIVQS AAIYIHELKG AREQLRRRNE ELKARILGHD  420
ARQPSVKVDF EVDDPASGTD CMIGALRRLR SMGVKARGIR SSMSGGKLWT EMNVETTVSD  480
P

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5940	34	50