PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03777.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 345aa MW: 36027 Da PI: 10.0547

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03777.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F+++ L H++ H Zmw_sc03777.1.g00010.1.am.mk 150 FECHYCRRNFPTSQALGGHQNAH 172 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.86E-6	147	178	No hit	No description
PROSITE profile	PS50157	11.323	150	177	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	152	172	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MKQLVPNQIV VPTPQLRRDA SDRDPIQSRM SERDAPDGKT SASAGAAASI DSFSQLPFIH 60 PGLPPPPPPR PPPSAGSTPG IRLFGIDVPP DASATAKTAS PPPPPPTGVK VTEAANVVEE 120 SAETTNTDAT TTTTAGAGAS GDGAGGARKF ECHYCRRNFP TSQALGGHQN AHKRERQHAK 180 RAQFQTAMAM HHRHHHGQYY PLVPDAAHLH ATYRHHHRFS AAPPPPPHYP SWAGAGRYSY 240 YNGPGSISQP INGSPVAPSG SWRGPLGGVG VGAAFAARSQ ERPAPPPSLP VPGVGGEEPR 300 LGGMARPPGS RSFSPSTSSS SSSSSPHQLP APPEHKENVS LNLSL

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MKQLVPNQIV VPTPQLRRDA SDRDPIQSRM SERDAPDGKT SASAGAAASI DSFSQLPFIH  60
PGLPPPPPPR PPPSAGSTPG IRLFGIDVPP DASATAKTAS PPPPPPTGVK VTEAANVVEE  120
SAETTNTDAT TTTTAGAGAS GDGAGGARKF ECHYCRRNFP TSQALGGHQN AHKRERQHAK  180
RAQFQTAMAM HHRHHHGQYY PLVPDAAHLH ATYRHHHRFS AAPPPPPHYP SWAGAGRYSY  240
YNGPGSISQP INGSPVAPSG SWRGPLGGVG VGAAFAARSQ ERPAPPPSLP VPGVGGEEPR  300
LGGMARPPGS RSFSPSTSSS SSSSSPHQLP APPEHKENVS LNLSL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001142755.1	1e-80	Zinc finger protein
TrEMBL	A0A0A9BA26	6e-81	A0A0A9BA26_ARUDO; Uncharacterized protein
STRING	GRMZM2G151639_P01	5e-80	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP834	17	20