PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03797.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 116aa MW: 12452.1 Da PI: 7.5039

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03797.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	26.8	1.2e-08	89	110	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cgk+F+ + +Lk+H+++H Zmw_sc03797.1.g00020.1.sm.mkhc 89 ECEKCGKRFKKPAHLKQHMQSH 110 6*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.46E-8	41	110	No hit	No description
SMART	SM00355	18	43	65	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	0.0016	88	110	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.424	88	115	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	4.7E-7	89	111	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF00096	5.7E-6	89	110	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	90	110	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MGGRAGGPVA GGEEESGCGD GMAGTTVATA GATPDPVRDV RRYKCEFCGV VRSKKSLIHA 60 HVLEHHKDEV DGVEAYQGCG VPSKELIQEC EKCGKRFKKP AHLKQHMQSH SLETTY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566649.1	3e-33	transcription factor IIIA isoform X1
TrEMBL	A0A2T7E7G6	8e-33	A0A2T7E7G6_9POAL; Uncharacterized protein
STRING	BRADI2G37790.1	1e-32	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17974	8	10