PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03801.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 359aa MW: 39336.3 Da PI: 10.4465

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03801.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	91.2	1.2e-28	21	134	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT........ CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks........ 74 F+ k++++++d++++ +++w +n+f+v+d+ f++ +Lp+yFkh+nfaSFvRQLn+Y + +++ +s Zmw_sc03801.1.g00050.1.am.mk 21 FVAKTFHMVSDPATDAVVRWGVASNTFLVVDPAAFSDYLLPSYFKHRNFASFVRQLNTYVIFDASPARATFSSerscralg 101 9******************999*******************************8666665555544457787777 PP ....XTTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 75 ....kekiweFkhksFkkgkkellekikrkkse 103 + + weF+h+sF +g+++ll i rkk++ Zmw_sc03801.1.g00050.1.am.mk 102 frkvDADRWEFAHESFLRGQTQLLPLIARKKKN 134 665449**********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.8E-31	11	125	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.4E-36	17	131	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	9.11E-26	18	131	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	2.1E-11	21	44	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.1E-24	21	131	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.1E-11	59	71	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.1E-11	72	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MGSECKLQLH AEQQAGAIAP FVAKTFHMVS DPATDAVVRW GVASNTFLVV DPAAFSDYLL 60 PSYFKHRNFA SFVRQLNTYV IFDASPARAT FSSERSCRAL GFRKVDADRW EFAHESFLRG 120 QTQLLPLIAR KKKNKPGCGG RELRDEGEEV RGTIRAVQRL REEQRGMDEE LQAMDRRLQA 180 AESRPGQMMA FLAKLADEPG VVLRAMLAKK EELAAAGGNG ASPPALEAPG KRRRISGAET 240 GRGDLGGVAD QGMGAVQRSH VEAGAVALAL RNFLKVSHTY ATALATRAAA TPLALRIRLR 300 VALPEMKHLA LHIRPRTAPP VSSSRCDLLP VRDEAPLVMA HLYHFRSHRP LLLFTPGSC

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MGSECKLQLH AEQQAGAIAP FVAKTFHMVS DPATDAVVRW GVASNTFLVV DPAAFSDYLL  60
PSYFKHRNFA SFVRQLNTYV IFDASPARAT FSSERSCRAL GFRKVDADRW EFAHESFLRG  120
QTQLLPLIAR KKKNKPGCGG RELRDEGEEV RGTIRAVQRL REEQRGMDEE LQAMDRRLQA  180
AESRPGQMMA FLAKLADEPG VVLRAMLAKK EELAAAGGNG ASPPALEAPG KRRRISGAET  240
GRGDLGGVAD QGMGAVQRSH VEAGAVALAL RNFLKVSHTY ATALATRAAA TPLALRIRLR  300
VALPEMKHLA LHIRPRTAPP VSSSRCDLLP VRDEAPLVMA HLYHFRSHRP LLLFTPGSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hdg_A	2e-21	18	131	7	110	Heat shock factor protein 1
5hdn_A	2e-21	18	131	7	110	Heat shock factor protein 1
5hdn_B	2e-21	18	131	7	110	Heat shock factor protein 1
5hdn_C	2e-21	18	131	7	110	Heat shock factor protein 1
5hdn_D	2e-21	18	131	7	110	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	230	234	KRRRI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021311267.1	1e-113	heat stress transcription factor C-1b
Swissprot	Q942D6	1e-114	HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBL	A0A1B6Q5W3	1e-112	A0A1B6Q5W3_SORBI; Uncharacterized protein
STRING	Sb03g033750.1	1e-114	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11298	31	41

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Schmidt R, et al. Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica. AoB Plants, 2012. 2012: p. pls011 [PMID:22616023]