PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03820.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 203aa MW: 21333.5 Da PI: 8.1114

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03820.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.3	3.3e-38	16	72	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC+s++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ ++ Zmw_sc03820.1.g00010.1.am.mk 16 GEPCPRCESRETKFCYYNNYNTSQPRHFCKSCRRYWTKGGSLRNVPVGGGTRKSSSA 72 578**************************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-24	16	66	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-32	17	70	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.677	17	71	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	19	55	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
PEPATVKVEE APATAGEPCP RCESRETKFC YYNNYNTSQP RHFCKSCRRY WTKGGSLRNV 60 PVGGGTRKSS SASPASPKNP KRSKNSKRRR VAPSPDPVPS TDDAVASNAG VGNREPTPAP 120 LTEDAAAGNV EDRAHVAPPA AEQGFKSTSV ARGLGVTDAG GDGGKEPPDT GPFEWPSSCG 180 DLGSFWGAGV FTDTDQALFL NLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	90	KRRRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957110.1	1e-70	dof zinc finger protein MNB1A
TrEMBL	A0A1E5V289	8e-71	A0A1E5V289_9POAL; Dof zinc finger protein MNB1A
STRING	Pavir.Ba01771.1.p	3e-70	(Panicum virgatum)
STRING	Si030774m	5e-70	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367