PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03830.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 257aa MW: 26450.3 Da PI: 10.7611

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03830.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.5	0.00027	237	254	2	19
HHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa 19 r +h++ E+rRR +iN++ Zmw_sc03830.1.g00030.1.am.mk 237 RSKHSATEQRRRTKINDR 254 899*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.7E-4	233	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MEAGQAAREA HRKSVSSFVP PKPFSIVGLS IGAPASSSSS YGCACLALAQ FIITFLFAAI 60 TGAREGDLSV PVPSLPMQLF QGEKPAHDFL SLHTGGGASS PVQDRSTQGV HNGLKPLKLG 120 KPQRGGGAIA MASSGLEADD SEEHVLPGGV GTFSIRQVAS GQSRGEAASH GGVRAAFVPG 180 LHGSGTEGAR GADSGARAAH SGPSTMWRDS GTDQRSRTTR EGRSSGSSAD QGPNTPRSKH 240 SATEQRRRTK INDRQAR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001146169.2	6e-62	uncharacterized protein LOC100279738
TrEMBL	A0A3L6RRF8	1e-64	A0A3L6RRF8_PANMI; Transcription factor BIM2-like isoform X2
STRING	GRMZM2G317450_P03	2e-61	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP762	37	128