PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03880.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 143aa MW: 16278.7 Da PI: 7.0485

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03880.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.3	6.7e-19	52	133	12	99
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 k+ ++p kf++++ +++ t+tle+ sg +ev++ +++ g+ v+++GWk F++a++L++gDf+vFk+dg s f Zmw_sc03880.1.g00020.1.sm.mk 52 KHFFKSMPDKFVQHFFARPAG--TVTLESHSGYAFEVEV--TNRLGKLVFEAGWKAFASAHDLNTGDFLVFKYDGLSHF-- 126 5566699***777777766..8***********..******************************998999.. PP EEEEE-S CS B3 93 vvkvfrk 99 +v +f+ Zmw_sc03880.1.g00020.1.sm.mk 127 KVLIFDP 133 9999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	8.91E-19	47	132	No hit	No description
SuperFamily	SSF101936	9.61E-21	51	141	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.1E-15	52	132	IPR003340	B3 DNA binding domain
SMART	SM01019	8.1E-7	54	134	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	7.8E-22	57	142	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.942	58	134	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MGEGEIVSRG YDLLVICDPR CRCDPQMRKP CKECNCKVMD GYHDQNPDKK DKHFFKSMPD 60 KFVQHFFARP AGTVTLESHS GYAFEVEVTN RLGKLVFEAG WKAFASAHDL NTGDFLVFKY 120 DGLSHFKVLI FDPSCCEKVL PCT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022679255.1	3e-37	putative B3 domain-containing protein Os03g0621600 isoform X1
TrEMBL	A0A368SHC7	8e-36	A0A368SHC7_SETIT; Uncharacterized protein
STRING	Sb01g014440.1	1e-32	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2901	29	85