PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03904.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 217aa MW: 23299.5 Da PI: 9.9915

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03904.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.3	4e-29	89	145	2	54
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ....kYR 54 pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ +YR Zmw_sc03904.1.g00070.1.sm.mk 89 PRMRWTTALHAHFVQAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQarapMYR 145 9*************************************************5555566 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.51E-14	85	140	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.9E-26	86	146	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-21	89	138	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-6	90	138	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MNSTTVTGAT PDLSLHISPP SPADGGGETP EPSSTLRLGL DTAAKTVVDA AQRGLLVQQR 60 LHQPSQTAHG FKKSSGAGAR GRKRCSRAPR MRWTTALHAH FVQAVELLGG HERATPKSVL 120 ELMNVKDLTL AHVKSHLQAR APMYRTVKST DRSCVAGHGQ AREMGFLMGR GDAPEMDGLF 180 DGFNCNVVNT TAMFSSNSST SRLLGPVLKE EAYMHEL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-15	90	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-15	90	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-15	90	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-15	90	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-15	90	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-15	90	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-15	90	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-15	90	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:19054366, ECO:0000269\|PubMed:20444210}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020183178.1	2e-68	probable transcription factor KAN4
Swissprot	Q9FJV5	3e-35	KAN4_ARATH; Probable transcription factor KAN4
TrEMBL	A0A0A9GQA6	4e-81	A0A0A9GQA6_ARUDO; Uncharacterized protein
STRING	Pavir.J09156.1.p	1e-69	(Panicum virgatum)
STRING	Traes_5DS_39E5EF501.2	1e-69	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3742	31	68

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS. Plant Physiol., 2016. 172(4): p. 2403-2415 [PMID:27794102]