PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03906.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARR-B
Protein Properties Length: 632aa    MW: 69216.8 Da    PI: 6.7941
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03906.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.56.1e-28208261155
                         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                     kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl
  Zmw_sc03906.1.g00010.1.sm.mkhc 208 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 261
                                     79*******************.********************************8 PP
2Response_reg79.61.1e-26271351109
                                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEE CS
                    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivv 77 
                                     vl vdD+p+ ++ll+ +l++ +y +v+++ ++  al+ll+ek+  +Dl++ D+ mp+mdG++ll+     e++lp+i++
  Zmw_sc03906.1.g00010.1.sm.mkhc  27 VLAVDDDPTCLKLLEGLLRRCQY-HVTTTGQAATALKLLREKKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 103
                                     799********************.***************888888*******************87754.558****** PP

                                     ESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                    Response_reg  78 tahgeeedalealkaGakdflsKpfdpeelvk 109
                                     +a+ge +++ + +  Ga d+l Kp+  e+l++
  Zmw_sc03906.1.g00010.1.sm.mkhc 104 SANGETQTVMKGITHGACDYLLKPVRLEQLRT 135
                                     *****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363929.9E-1913632IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23007.0E-4224156No hitNo description
SuperFamilySSF521722.28E-3524146IPR011006CheY-like superfamily
SMARTSM004481.5E-3225137IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.63826141IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.7E-2427136IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.83E-2728140No hitNo description
PROSITE profilePS5129411.34205264IPR017930Myb domain
SuperFamilySSF466895.73E-20205265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-29205266IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-24208261IPR006447Myb domain, plants
PfamPF002492.3E-6210260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MTVEEVKPLG KANGHGGKDQ FPVGMRVLAV DDDPTCLKLL EGLLRRCQYH VTTTGQAATA  60
LKLLREKKDQ FDLVISDVHM PDMDGFKLLE LVGLEMDLPV IMLSANGETQ TVMKGITHGA  120
CDYLLKPVRL EQLRTIWQHV VRRRSCDAKN HGNENDDMGK KAMNAEGENG GANRNKRTSR  180
KVRDDNGDDG DDSDENSNEN GDSATQKKPR VVWSVELHRK FVAAVNQLGI DKAVPKKILD  240
LMNVENITRE NVASHLQKYR LYLKRLSADA SRQANLTAAL GGRNPAYINM GLEAFKHYNA  300
YGRYRPIPTS NHSQPNNLLA RMNSPSAFGM HSLLPSQPLQ IGYNQNNLSA SLGNVGGMSN  360
GNHIQGASMS LQDSSTCFPT VPSGNSFANM SNATTLAPTN SLPLRSLEPS NQQHLGRMHS  420
SSADPFNSFV GESPPFPDLG RRNTTWPTAV SSSIQELRQK DSMSQATLCV NALKIEPLSS  480
FTESSCQIPL LGNDLQNQVT SLTSNALPMP FNQDAVPFTY GSSTNTREMM SNNVAASNSV  540
INASLPNFRI DNSTVPMQTM DIGNAGGIPS LQDGRIDQQA VSNQLNYNNE LMGRRRLQRG  600
LSGGLDDIVV DMFRPEHAVD GIPFIEGDWE VV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-25206267364ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682995.10.0two-component response regulator ORR24
SwissprotQ6H8050.0ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLK3YQT60.0K3YQT6_SETIT; Two-component response regulator
STRINGSi016630m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]