PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03914.1.g00110.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 289aa MW: 30859.9 Da PI: 7.5488

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03914.1.g00110.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.7	1.2e-09	118	165	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +rEr RR+r+ ++f+ L llP+ K K +i+ Av YIk+L+ Zmw_sc03914.1.g00110.1.sm.mkhc 118 RHIMRERLRRERLSQGFADLHALLPPG----TSKGGKNDIVGAAVGYIKELE 165 599*********************5....47888999********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.53E-14	113	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.249	114	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.3E-12	114	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.7E-7	118	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-5	120	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MDSFYFDVVQ DAVIGIGDDG YLASLGGVTL PPAPGGAFAA YQQGKSLEPG LTMSRGGGRC 60 SSGAGGANVH RRMFWYLRRI GDGAAAPSTG NVAVGADPVP SHRDAETSQA PRGSSRFRHI 120 MRERLRRERL SQGFADLHAL LPPGTSKGGK NDIVGAAVGY IKELEGRRRR LRARNDELLE 180 QEARTGSSMV VTVRAEIEQH SVAVDVFGMV LQRLEAMEEL QVTGIRSCFD GGGMWMNVAV 240 HCQVSSPDVG KAVTNALMKE LEENAVGMQV PGSSGPAFSC QVERGAPMW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	128	RLRRER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012701619.1	9e-84	transcription factor BHLH148
TrEMBL	K3XK97	2e-82	K3XK97_SETIT; Uncharacterized protein
STRING	Si002320m	3e-83	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12730	24	32